Trichoplusia ni (cabbage looper): 113496840
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Entry
113496840 CDS
T05757
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl04512
ECM-receptor interaction
tnl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113496840
04518 Integrin signaling
113496840
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tnl00536
]
113496840
Glycosaminoglycan binding proteins [BR:
tnl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113496840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC2L_2nd
VWC
NELL_VWC_C
Motif
Other DBs
NCBI-GeneID:
113496840
NCBI-ProteinID:
XP_026732010
UniProt:
A0A7E5VUI6
LinkDB
All DBs
Position
8:2141352..2150852
Genome browser
AA seq
1503 aa
AA seq
DB search
MGVMRWLWLAACAALVLPAASKELVEGPPREDITQELPQAQDPDIINYDDYNPFGEDDDV
VGLQERDFPRSTSSTPPFRRTQVPTPRAPTISKCVDIGRTWNEGENWKRDNCTLCQCHGG
RVNCTIVPACLTAQIPNRPVFVGSAAQPTSPVRGVVGSPGDEGPPGPPGSPGVNGVPGAP
GMPGPAGPIPDVNAYLAQLAASAGGDKGPAFDPYQYMQASVGTPGIRGIPGPQGPPGPQG
FQGQRGEPGEPGLPGQQGPPGERGPQGLPGKDGSPGEDGEPGPTGSVGQPGPRGTPGVPG
IQGLKGHRGFDGRDGAKGEQGLPGEKGPTGIPGPLGPIGPAGPVGARGERGREGPPGPPG
VRGVDGAPGPPGMTGNTGKPGSPGFPGSAGIKGETGIAGPKGSQGMQGPRGEAGRPGPAG
ETGAPGIPGLDGIPGEKGIQGQPGSSGPQGFPGPRGLPGTPGDSGLPGAKGMPGQPGERG
QKGDGGIRGESGAPGPRGLPGNSGPEGKRGKRGLRGPAGNVGPQGERGLQGLRGLPGEYG
LPGNKGNTGERGYPGIPGPKGTHGDIGGIGPQGMPGPPGPVGRPGMPGRTGPVGERGIPG
ADGKPGDKGPQGISGPPGPMGSIGVPGLRGEPGRDGEPGAAGPQGEKGDAGLDGSPGVQG
PQGVAGPAGERGPVGPSGPTGFPGMPGAAGMPGSPGKDGEPGMAGPIGPPGPSGPRGERG
FTGDRGQPGQPGAPGEKGETGALGPDGPPGPEGLRGSKGHPGSPGVMGMPGQRGMNGAPG
EKGERGAAGPPGNDGPAGRQGEQGPQGPIGPVGPAGEPAERGEPGTPGVPGELGAPGSPG
ERGQPGPQGLQGFPGPQGLTGMPGLKGDRGYAGAKGQQGNTGSPGIPGETGARGLPGLSG
AKGARGDYGPKGETGHAGLPGRPGDLGPPGPQGSTGPAGAPGMPGPKGSTGDSGRPGAPG
PIGLTGPQGQLGPKGERGSEGEPGPQGPSGPPGAAGERGPGGLPGIAGPPGPQGLRGAQG
ESGTPGKPGADGAPGQAGPQGRQGPQGQMGEPGPEGRPGKQGQPGIAGRPGDKGPMGPSG
SAGPVGPPGAQGPSGPTGPPGPSGERGPRGESGPPGVDGPRGTPGSVGPPGPFGPKGDRG
ESGADGAKGHAGLPGLPGMAGVPGRTGERGLPGPMGPPGKDGDVGSRGIPGRDGSPGMQG
PPGPQGGQGPPGEPGRHGSPGPSGPPGPPGPPGEGLAYDAAAIAAMLQQGSVKGPDPLGD
DPNLMPPRFFKDDMSAAERKEVVMKAYERLKVSLDKFLKPDGSKEAPAKTCGDIKYHHPE
FESGQYWIDPNGGDMNDAIVVYCDMTTGSSCVFPKPIQSQDIAFTGKQHEPWLSEMDEGF
TITYKADHTQLTYLQLMSAKASQNVTFHCRNTIGYYDARTKNYRKGIKLLAYNDAEILPK
ANNRLRYKALLDECQHLSSSWARTIVEYETDKPGRLPLLDVAIRDVGRPQQMFRVELGLA
CFT
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaatgcggtggctatggctggctgcgtgcgcggccttggtgctgccggctgcc
tccaaggagctggtggagggccctcctcgtgaagacatcacgcaggagctgccgcaggcg
caggacccggacatcatcaactacgacgattataatcccttcggggaggatgatgatgtt
gtcggattgcaggagagggacttcccaagatcaacaagcagcacaccacccttcagaaga
actcaagttccgacgcccagagctccaactatctccaaatgcgtggacatcgggcgtacg
tggaatgagggagaaaactggaagcgtgacaactgtactctctgccagtgtcatggcggc
cgagtcaactgcaccatagtacctgcttgccttacagctcaaataccaaaccggccagta
ttcgtgggttctgcagcccagccgacatcgccagtgcgtggtgtagtgggatcgcctggc
gacgagggtccgcccggcccgcctggctcacccggagtcaacggcgtgcccggagcacct
ggcatgcccggacccgctggacctatacctgatgtaaacgcgtatctggctcaactagca
gcttcagctggaggtgacaaaggaccggccttcgatccgtatcagtacatgcaagcttct
gttggcactccaggaatcagaggaataccaggaccacaaggcccgcctggtccgcaaggt
tttcaaggtcaacgaggtgagcccggtgaacctggtctgccaggtcagcaaggaccacct
ggagaaagaggaccgcagggattaccaggaaaagatggttccccgggagaagacggtgaa
ccgggtcctacaggatcagttggccagccaggacctcgcggtaccccaggtgtgcctggt
attcaagggttgaaaggacatcgtgggttcgacggccgagacggggctaaaggtgaacaa
ggattgcctggagaaaaaggacccactggaatacccggtcctttaggaccaataggacca
gctggtccagtcggcgctagaggtgaaagaggtcgagagggaccccccggaccacctggc
gtacgtggagtcgacggtgcgcctggacctccaggaatgacgggtaatactggcaaacca
ggttctcctggtttccccggaagcgcgggaataaaaggagaaacgggtattgctggtcca
aagggcagtcaaggaatgcaaggtcctcgcggtgaagcgggtcgtcctgggccagcaggt
gaaacaggtgctccaggaatccctgggttagatggtatacctggcgaaaaaggtattcaa
ggacagcctggtagttcaggaccacagggtttcccaggaccaagagggttacccggtaca
cctggagattcaggattgccaggagctaaaggaatgccgggtcagccaggtgaaagagga
cagaaaggtgatggtggcatcagaggtgaatctggtgcccctggacctcgtgggctgcct
ggaaatagcgggccagagggtaaacgcggaaagagaggactaagaggacccgctggtaac
gttggacctcaaggcgaaagagggttacaaggattaagaggattgcctggtgaatatggg
ttaccagggaataaaggtaacacgggcgaaagaggatacccgggtattccaggacccaaa
ggtactcacggtgatatcggtggaataggaccacaaggtatgcctggaccacccgggcct
gttggtaggcctggaatgcctggaagaacgggtccagtgggtgaaagaggaataccggga
gctgatggcaagccaggtgacaaggggcctcaaggcataagcggtccaccggggcctatg
ggcagtattggagtgcctggattacgaggcgaacctggaagagacggcgagccaggggca
gcagggcctcaaggtgaaaaaggtgatgctggtcttgatggcagtcctggtgttcaaggg
cctcagggagttgctggaccagccggtgaaagaggaccggttggcccttcgggacccacg
ggattcccaggtatgccaggagccgctggcatgccaggctcgccaggtaaggatggcgag
ccgggtatggctggtccgataggaccacctggcccgtcaggaccaagaggagaaagaggg
ttcactggagacagaggtcaacctggccagcctggcgcaccaggggagaaaggtgaaaca
ggggcactgggaccagatggaccaccgggtccggagggcttgagaggtagcaaaggtcac
cctgggtctcccggagttatgggtatgcctggacaacgtggaatgaatggagctcccgga
gagaaaggggaaaggggcgctgcagggccacctggcaatgatggacccgcaggtcgtcag
ggagaacaaggaccacaaggaccaattggtccagttggtccagccggtgaaccagcagaa
agaggcgagcctggtactcctggagtgcctggagaattgggagcccctggttcccctggt
gaacgtggccaacctggaccacaaggcttacagggtttcccaggaccacaaggtctaact
ggcatgccaggtctaaagggcgacagaggctacgctggtgcaaaaggacagcagggaaat
actggcagtccaggtatacctggtgagactggagctcgtggtttacctggcttgtctggc
gctaaaggggcacgcggtgattatggacctaaaggagagacaggacatgccggattacct
ggtagacctggagacttaggaccaccgggacctcaaggcagtacaggaccagcaggcgcc
cctggcatgccgggacctaaaggttctacgggagactccggtaggccaggtgcccctggg
ccgattggtttaactggtccccaaggccaactgggacctaaaggtgaaagaggtagcgaa
ggtgaaccaggtccacaagggccaagcgggccccctggggcagctggtgagcggggtcca
ggagggttaccaggaatagcaggtccacctggaccacagggacttcgaggcgctcagggt
gaaagcggcaccccaggcaaaccaggtgccgacggtgctcctggacaagctggacctcaa
ggacggcaaggacctcaaggccagatgggtgaacctggaccagaaggacggcctggcaag
caaggacaaccgggaatagctgggcggccaggcgacaaaggtcctatgggaccatcaggc
tcggcgggcccagtaggacctccaggagctcaaggtccatccggccccacaggccctcct
ggcccttcaggtgaaagaggaccaaggggcgaaagcggcccaccaggagtagacggtcct
cgtggaactcctggtagtgtgggaccacctggaccatttggaccaaaaggcgaccgaggt
gaatctggagcggatggtgctaaaggtcacgctggactgccaggtcttccgggaatggct
ggtgtcccgggaagaactggtgaaagaggattacctggaccgatgggaccacctggcaag
gatggagatgttggctcacgaggtattccggggcgtgacggtagcccaggtatgcaaggt
ccaccaggtccccaaggaggccaaggtcctcctggagaaccaggaagacatggttcacct
ggtccttcgggtccccccggaccaccagggccacctggcgaaggtctcgcttatgacgcc
gccgccattgcagctatgttacagcaaggttctgtgaaaggccctgacccgcttggagac
gaccccaacttgatgccaccccgtttcttcaaagacgatatgtcagctgccgaacgcaag
gaggttgtgatgaaggcttacgaaagattgaaagtctctttagataagttccttaaacct
gatggttccaaggaggcgcccgcaaagacctgtggtgatattaagtatcaccatccagag
tttgagagtggtcaatactggatcgatcccaacggcggtgacatgaacgatgctatcgtg
gtttactgtgacatgacgaccggcagcagctgtgtgttccccaagccgattcagtcgcag
gacatagccttcactggcaagcaacacgaaccctggctcagtgagatggatgaaggattc
actattacgtacaaggcggaccacacacagctgacttacctgcaactgatgtcagcgaag
gcgtctcagaacgtgacgttccactgtcgcaacactatcggctattacgacgcgaggacc
aagaactacaggaagggcatcaagctgctggcgtacaatgatgctgagatcttaccaaag
gctaacaacagacttagatataaggcgctattggatgagtgtcagcacctgagttctagt
tgggcgcgaactatcgttgagtacgagaccgacaagcctggtcgcctgcctctcctcgac
gtagccatcagggatgtcggcagacctcaacagatgttcagggtggagctaggtctagca
tgctttacttag
DBGET
integrated database retrieval system
