Trichoplusia ni (cabbage looper): 113496924
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Entry
113496924 CDS
T05757
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03020
RNA polymerase
tnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113496924
09124 Replication and repair
03420 Nucleotide excision repair
113496924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113496924
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113496924
Enzymes [BR:
tnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113496924
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113496924
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113496924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
113496924
NCBI-ProteinID:
XP_026732119
UniProt:
A0A7E5VUV6
LinkDB
All DBs
Position
8:14624342..14631363
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AA seq
1900 aa
AA seq
DB search
MATTNDSKAPVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQHGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKEDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFSEDIIKELTESGYVISDLESEWEQLCKDREVLRQIF
PSGESKVVLPCNFKRMIWNAQKTFHINKRMPTDLSPIKVISGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSTVAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEMGGLGVGGVGGGMYFGVGTPSMTP
LMTPWSTQNTPGYGSSAWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSPG
SPGPPLSPYTSPAGASPSYSPTSPVYAPASPSLTPTSPHYSPTSPSYSPTSPNYSPTSPI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPGY
SPTSPSYSPTSPAYSPTSPSYSPSSPKYSPSPNYSPTSPSVAGGSPTYSPTSPQYSPTSH
QYSPTSPAYSPSSPQHPGSTRYSPSSPNYSPSSPNYSPSSPGYSPSSSKYSPTSPTYTPT
SPNYSPSSPAYSPSSAGPTSYSPTSPSYSPTSPNYDDGDD
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgaatgattctaaggcgcctgtgcgccaagtaaaaagagtacaatttggt
atattatctccagatgaaatccgacggatgtcagtcacagagggtgggattcgtttcccc
gaaaccatggagggcggtcgacccaagcttggcggacttatggatccgcgacaaggggtg
atcgataggagttccagatgccaaacatgtgctggaaatatgactgaatgtcctggacat
tttggacacattgacttggccaaaccagtttttcacattggttttataactaaaactatc
aaagtactaagatgtgtttgtttttactgttcaaagctgcttgttagcccaactaatcca
aagataaaagaagttgttatgaaatcaaaaggacagcctcgtaagagattgacatatgtt
tatgatctatgtaaaggcaaaaatatttgtgagggtggtgaagatatggatatagggaaa
gagggtgaagagggaaaaagaggttctggccatggtggttgtggtcattaccaaccctcc
ataagaagacaaggtcttgacctcacagctgagtggaagcatgcaaatgaggacactcag
gaaaagaaaattattataacggctgaaagagtgtgggagatacttaaacatatcacagat
gaagaatcctttatacttggtatggaccctaaatttgccagaccagattggatgatagta
acagtattgccagttccaccattgtcagtacgacccgctgtagtgatgtttggctcagcc
aagaatcaagatgacttgacacataaacttgctgacataatcaaagccaataatgaacta
atgagaaatgaacagtctggtgcagcagcacacgtgcttgctgaaaacattagattgcta
cagtttcatgttgccacatttgttgataatgatatgcctggtatgccaaaggctatgcaa
aagtcaggaaagcccctcaaagcaatcaaagctcgtctaaaaggaaaggaaggtagaatc
agaggcaacctcatgggaaaacgagttgacttttcagctcgtactgtcattacaccagat
cctaacttgcgtattgatcaagtaggagtgccaagatccattgctcagaatttgacattc
ccggaactggtaacaccattcaacattgacaggatgcaggagcttgtccgtagaggcaat
gcacagtatcctggagcgaagtatattgtaagggataatggagaaagaatagatttaagg
tttcatccgaagccatctgacttgcatctgcaacatggttacaaagtagaacgccacttg
agagatgatgatctagttattttcaaccgacagcctactcttcacaaaatgagtatgatg
ggtcacagggtaaaagtacttccatggtcaacattccgtatgaatttaagttgcacatcg
ccttataacgccgatttcgatggtgatgaaatgaacttgcatgtacctcaatcaatggaa
acaagagcagaagttgaaaatattcacataactcctagacagattatcactccacaagca
aacaaacctgttatgggtattgtacaggacacactgacagctgtcaggaaaatgacaaag
cgtgatgttttcttgacaaaagaacaagtcatgaatcttcttatgttcttgccaacatgg
gatggtaaaatcccacagccttgcattttgaagccccaaccactgtggactggtaaacaa
atcttcacccttattattcctggacccgtgaatatgattagaacacactcaacacatcct
gatgaagaagatgatggtccatataagtggatttctcctggagacaccaaagttgttgta
gaacatggagagctgctcatgggtatattgtgtaaaaagtcacttggtgcctcagctggt
tccttgctacatatttgcatgttggagttaggtcatgaaactgctggccgcttctatggt
aacattcagactgtaatcaacaactggctacttttggaaggccactctatcggtattggc
gacaccattgccgatccgcaaacataccaagaaattcagcgggccattgtaaaagccaaa
gaggatgtcatagaagtaattcaaaaagctcacaacatggaactggagcctactcctggt
aatactctcagacagacattcgagaatcaagtaaatcgtattctgaacgacgctcgtgac
aaaactggtggatcggctaagaaatctctcactgaatacaacaacttaaaggctatggtg
gtagctggttccaaaggatccaatattaacatctctcaggttattgcctgtgtaggtcaa
caaaacgttgaaggtaagcgaattccgtttggttttcgtaaacgaacattgccgcatttc
atcaaagacgattatggtcctgagtcgagaggattcgtagaaaactcatatcttgctggt
ttaactccttccgagttctacttccacgccatgggaggtcgtgaaggtcttatcgatact
gccgtaaaaactgctgagactggatatatccaacgtcgtttgatcaaagctatggagtct
gtcatggttcactatgacggcactgttcgtaattcagtcggacaactaattcagttgaga
tatggtgaagacggattagctggagaaactgtagagttccagaacttaccaacagtgaaa
ctatctaataaagcatttgaaaagaaattcaaatttgatccttccaatgagaggtactta
aagaggatctttagtgaagacataatcaaagagttgactgaatctggatacgtcattagc
gatcttgaaagtgaatgggaacaactttgtaaggacagagaggtgttgcgtcagattttc
ccgagtggtgaatctaaagttgtattgccttgcaacttcaagagaatgatttggaatgca
caaaagactttccatattaacaaacgtatgccgacggatctgagtcctataaaagttatt
tcaggtgtcaaagacttacttaaaaaatgcgttattgtagcaggagaagatcgcttatct
aagcaagctaacgaaaatgctactctactgttccaatgtttggtccgctctactctgtgc
actaaattcgtatctgaagaatatcgtttatcaactgtggcatttgaatggctgattgga
gaaattgaaactagattccaacaagcacaagtaaaccctggcgagatggttggtgctctc
gctgcacagtctcttggcgagcccgctactcagatgacattgaacactttccattttgct
ggtgtgtcgtctaaaaacgtaactctgggtgtaccacgacttaaggaaattatcaatata
tctaagaaacccaaagctccatctctaactgtgttcttgacgggtggtgccgccagggac
gctgaaaaagctaagaatgtgctatgtagattggaacatacaacgctgcgtaaggtgact
gctaatactgctatttactatgacccggacccgcaaaatactgtaatcgccgaagatcaa
gaattcgttaatgtttactatgaaatgcctgattttgatcctacgaaaatttctccatgg
ttgttacgtattgaattagaccgcaaaagaatgactgacaaaaagcttaccatggaacag
attgctgaaaagattaacgctggatttggtgatgacttaaattgtattttcaatgacgac
aatgcagaaaaacttgtattgcgtatcaggattatgaataatgaagaaagcaaattccaa
gataatgaggaagagactgttgataaaatggaggatgacatgttcttgcgatgcatcgaa
gctaacatgctgtcagacatgactttacagggaatagaggctattgccaaagtgtacatg
catttaccacagactgaagcgaaaaaacgtattataattacagagcaaggagaattcaag
gctattgctgaatggttattggaaactgatggtacatcattgatgaaagttctttcggaa
agagatgttgaccccataaggacattcagtaacgatatttgtgaaatattccaagttctt
ggaatagaagccgtgcgtaagtcggtagagaaagaaatgaatgctgtattgcagttctac
ggtctctacgtaaactaccgtcatcttgccttactttgtgacgtaatgactgctaagggt
catcttatggccatcacacgtcacggtattaatagacaagataccggtgcacttatgaga
tgctccttcgaggaaacagttgacgtgctactggatgctgccagtcacgctgaagttgat
cctatgagaggcgtatccgaaaatataatcatgggccagttgccgcgtatgggaactggt
tgtttcgatttactccttgacgctgagaagtgtaagctcggtatggagatgggtggtctt
ggcgttggcggcgtcggcggcggcatgtacttcggcgttggtactccatccatgacaccg
cttatgaccccgtggtctactcagaacacgcctggatatggcagcagcgcatggtctcct
ggtcaagtgggcagcagcatgactccaggtggaccgtccttctcgccatctggtgcatcg
gacgcctctggtttatcccctgcttacagcgcgtggtcgccgcagccaggctcgccgggg
tcgccggggcccccgctatcgccgtacacgtctcccgccggcgcatctccctcatactca
ccaacaagtcctgtgtacgcgcctgcctcacccagcctcactccaacgtctccacattat
tcgccgacgagcccttcgtactcaccaacttcaccaaactattccccgacgtctccaata
tattcaccgacttcaccgagctattctcctacttcacctggttattcgccaacgtcgcca
tcgtactctccaacgtcacctagctattcacccacgtcaccaagttattcaccgacaagt
ccagcatattcaccgacttcaccaagctactcaccgacttcgccaagctattctccgact
agtccgtcttattctccgacaagcccttcgtattctccaactagtccagcttattcaccg
acgtcacctgggtactcgccatcttctccgagttactccccgactagccccgtttacagt
cccgcttctcctagttactcgccatcatcaccaaattacaccccgacgtcaccgggctat
tctccaacaagtccatcttattcacctacgtcgcccgcatattctccgacttcgcccagt
tactcaccctcgtcacctaaatattctccgtcaccgaactattcaccgacatcaccgtcc
gtggcaggtggcagtcctacatattccccgactagtccacaatactcccctactagtcac
caatactccccgacgagcccagcctattcgccctcgtcgccacagcacccaggtagcacg
cgctactcgccatcttcacccaactattctccatcatcgccaaattactctccgtcatca
ccgggatattctccgtcgtcttcaaagtactcgcccacatcgccgacgtacacgcctact
tcccccaactattcaccgtcatcccctgcgtattccccgtcatcagcgggaccaacttcc
tactctcctacttcaccctcgtactctcctacatcgcctaattacgacgacggtgacgat
taa
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