Trichoplusia ni (cabbage looper): 113497171
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Entry
113497171 CDS
T05757
Name
(RefSeq) putative ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113497171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113497171
03036 Chromosome and associated proteins [BR:
tnl03036
]
113497171
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113497171
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113497171
mRNA degradation factors
5'-3' decay
Decapping complex
113497171
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113497171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
113497171
NCBI-ProteinID:
XP_026732383
UniProt:
A0A7E5VVL7
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All DBs
Position
9:7772340..7777768
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AA seq
442 aa
AA seq
DB search
MMTENRISSSNHVGNSMSSQNKGDVDKSIDDIGWKSKLKIPPKDRRIKTSDVTDTRGNEF
EEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV
DPKKDAIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRDDIMRIYQNVQVI
IATPGRMIDLMDKQVAKMDQCRMLVLDEADKLLSQDFKGMLDMVISRLPKERQILLFSAT
FPLSVKQFMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII
FCNSTQRVELLAKKITELGYCCYYIHARMAQAHRNRVFHDFRAGLCRNLVCSDLFTRGID
VQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFALHRIEQELGTEIKP
IPKVIDPALYVSRPDDDDSADK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgaaaatagaattagttcaagtaatcacgtcggaaacagtatgagcagtcag
aataagggagatgtcgataaaagtatcgatgacattggttggaaatcaaaattaaaaata
cccccgaaagacaggagaataaagactagtgatgtaacagacacaagaggaaatgagttt
gaagagttttgcctaaaacgagagctattgatgggcatttttgagaagggatgggaaaag
ccttcccccatacaagaggcttccattcctattgcacttagtggtaaagatgtccttgca
agagctaaaaacggtactggcaaaactggcgcttattgtattccagttttagaacaggtc
gatcccaaaaaagatgctatccaagctttaattgtggtaccaactagggagttagcgctc
cagacatcacaaatttgcattgaactggcaaagcacacagatattcgtgtaatggttact
acaggaggtactaatctccgggatgatattatgcgtatttatcaaaatgttcaagtaata
attgctacgccaggtcgtatgattgatctcatggataaacaagttgccaagatggaccag
tgcaggatgctggttcttgatgaggcagacaaacttctttctcaagacttcaaaggaatg
ctggatatggttatttcacgattacccaaagaacgccagatcttgctgttctctgccact
ttcccactgagtgttaaacaattcatggaaaaacacttaagagagccgtatgagattaat
ctcatggaagaactaacactgaaaggagttacacagtactatgcatttgtacaagaaaga
caaaaagtgcattgtttaaatacacttttttcaaagttgcaaataaaccagtctataata
ttttgtaattcaactcaacgtgtggagctgcttgcaaagaaaataactgagttaggttac
tgctgttattatattcacgcgcgtatggcgcaggcgcaccgtaatcgcgtattccacgat
ttccgtgctggactatgccgcaatcttgtgtgctctgatctctttactagaggtatagac
gtgcaagctgtcaacgtcgtcatcaattttgatttcccgcgcatggcggaaacctacctg
catcgcatcggtcgttccggacgtttcggccacttgggtatcgccatcaacctaatcacg
tacgaagaccgtttcgccctgcaccgcatcgagcaggagctgggcacggagatcaagccg
atcccgaaggtgatcgacccggcgctgtacgtgtcgcgcccggacgacgacgactcggcc
gacaagtaa
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