Trichoplusia ni (cabbage looper): 113498334
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Entry
113498334 CDS
T05757
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113498334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113498334
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113498334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
DUF2452
Motif
Other DBs
NCBI-GeneID:
113498334
NCBI-ProteinID:
XP_026734121
UniProt:
A0A7E5W1F4
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Position
10:2409670..2429549
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AA seq
916 aa
AA seq
DB search
MSSLQPIHALSLDSVQQQAFVKLFQSLPEKPATTVRIFDRNDYYSVHGSDATTAAREVFS
SVANIKKMGLEPNRLDYLVLSKGNFEILLKKLLLVRRYRVEIYVADGSVKGSDWSLKYKG
SPGYLSQLEEILGEGLGASDETTPCLMAVNIKTDAVTKGRLLGVACVTAGDYQMSVTEFT
DDDLLTELETITVQMAPSECLVPMSDSDDYKALKKVMERTNVTLTKLKKSEFSTEGLTQD
LNRLLKFKENQQQDANAFPETRKDVAMSSLAAAIKYSALLTDSTNFARFRLSTIQADCFL
HLDAAALAALNVFPELGDTTHAPSRSLYGLLDRCRTQQGKRLLAQWLRQPLRDINLINER
LDIVELMMNNSQLRLQLHEDHLRRIPDLQALARRLTRKKANLHDCYKIYQAINRLPALLR
CLGEADNATVHSSITEPISELNEDLGKFVQMIETTVDMEAVDRGDFLVKPSFDEQLQSLS
EQLEELQSTAEKELNKAARDLNLDAGKTIKLDCNPQNGFFFRVTMKEEQSLRGNKKYTII
DAVKGGVRFKTKALDNITEDYTSTKSSYEKEQDTVVAEIVGIAAGYSECLFSLSHILSRL
DVLVSFAVAAASAPAPYVRPVITEDINELVLKDLRHPCLEIAEGVSYIPNDVVFKRESSL
LHIVTGANMGGKSTWMRSCGAACVLAQAGAPVAAAAARLPALRALAARLGAADAEARGHS
TFMTEMLDTAAILRTATPDSLVLIDELGRGTSTYEGCGIAWAIAEELATKSKCFCLFATH
YQELTRLASAHPGVIVNSHAEASVVSGQLLLLHRIAPGPALHSLGLHVAKLADLPEHIID
YAEAKQAQLEINLFDVEAAVESQESTEGHKLIVEFLRKCKQIQEETTSDETMMKKIGALK
EELLKSNNKYVASLMA
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctttgcaacctatacacgctttaagcttggattctgtgcagcaacaggcattt
gtcaaattatttcagtctctaccagagaaacccgcaacaacagtgaggattttcgaccgc
aatgactactacagcgttcatggatctgacgcaaccaccgctgccagagaggtgttttcc
tctgtcgcgaacattaagaagatgggccttgagccaaaccgcctcgactatcttgtactt
tcaaaaggcaactttgaaattctcttgaagaaacttctactggtgagacgttacagagta
gagatatacgtggccgatggttcagtgaagggcagcgattggtcactcaagtacaaaggc
tcgcccggctatttgtcgcagctagaagagattcttggtgaaggactgggagcctccgac
gaaacgacgccatgtctcatggctgtgaacattaaaactgatgcagttactaagggtcga
ctgctcggcgttgcttgtgtgacagccggggactatcagatgtcagtcacagagttcact
gatgacgacttgcttacagaactagagactattacagtacagatggcgccctccgagtgt
ctcgtaccgatgagtgatagcgatgactacaaagcattaaaaaaggtcatggaacgcacg
aacgtaactttaacgaaattaaagaaatctgagttttcaactgaaggcctcacacaagat
ttgaatagattactcaagttcaaagagaatcagcaacaagacgccaatgcattccccgag
acgaggaaagatgtcgccatgagtagcttagctgccgccattaaatattcagctttattg
acagatagtactaattttgccagattccgcctatcaacaatccaggcggactgcttcctg
cacctggacgcggcggcgctggcggccctcaacgtgttccccgagctgggcgacacgacg
cacgcgccctcccgcagtctgtacgggctgctcgacaggtgtcgcacgcagcaggggaaa
cgtcttctagcacaatggctacgacaaccgctacgcgatataaacctaatcaacgaacgt
ctcgacatcgtggaactgatgatgaacaactcgcagcttcgattacaactgcacgaagac
cacctgagacgtatacctgacttacaagcgctagcaaggaggctgaccagaaagaaggct
aacttacatgactgttataaaatctatcaggctattaacaggctaccagccttactgcgt
tgtttaggagaagcagacaacgcaaccgttcactcatcaatcactgaaccaatatcggaa
ctcaatgaagatcttggaaaatttgtacagatgattgagaccactgtagatatggaagct
gttgatagaggcgatttcctcgtgaaaccttcctttgatgaacaacttcagagcttaagt
gaacaattagaggagcttcagtcaacagctgaaaaagagctgaataaagcggcgcgtgat
ctgaacctggatgccggcaaaactataaagttagattgtaacccacagaatggattcttt
ttcagggtcactatgaaagaggaacaatctctacgtggaaacaaaaaatacaccatcata
gatgccgtaaaaggaggtgtgagattcaaaactaaagcgttggacaatatcaccgaagat
tacacgtcaacgaaatcctcctacgaaaaggaacaagacacagtagttgctgaaattgtt
ggcatagcagcgggatattcagaatgtctgtttagcttgtcgcacatcctgtctcgtttg
gacgtgttggtatcgttcgcggtggctgccgccagcgctcccgcgccctacgtccggccc
gtcatcacggaggacatcaatgaactggtgttgaaggatctcagacatccttgtttagag
atagctgaaggagtttcgtatatacccaatgatgttgtttttaaaagagagtcgagcctg
ctgcacatagtgacaggcgccaacatgggcggcaagtccacgtggatgcggtcgtgcggc
gcggcgtgcgtgctggcgcaggcgggcgcgcccgtggccgcggccgccgcgcgcctgccc
gccctgcgcgcgctcgcggcccgcctcggcgccgccgacgcggaggcgcgcggacacagc
accttcatgaccgagatgctcgacaccgccgccatactgcggactgcgacccctgattct
cttgtcctaatcgatgaattaggaagaggaacctcaacttacgaaggctgtggaatagca
tgggctatagctgaggagctagcaactaagagtaaatgtttctgcctattcgcgactcac
taccaagagctaacccgcctggcgagcgcgcaccccggcgtgatcgtgaactctcacgcc
gaggcctccgtcgtcagcggccagctgctgctgctgcaccgcatcgcgcccggacccgcc
ctgcactcgctagggctacacgttgccaagctagctgatctacccgaacatattattgat
tacgctgaagctaaacaagcgcaacttgaaatcaatctctttgatgtggaggctgcagtt
gaatctcaagaatctacagaagggcacaaattaattgtggaattcctacgtaaatgtaaa
caaatacaggaggaaacaacatcggatgaaactatgatgaagaaaataggcgcactcaaa
gaagaattgttgaaatccaacaacaaatatgtagcatctcttatggcctga
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