Trichoplusia ni (cabbage looper): 113498435
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Entry
113498435 CDS
T05757
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03440
Homologous recombination
tnl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113498435
03450 Non-homologous end-joining
113498435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tnl03032
]
113498435
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113498435
DNA replication proteins [BR:
tnl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113498435
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113498435
BRCA1-C complex
113498435
NHEJ (non-homologous end-joining)
MRX complex
113498435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
SbcC_Walker_B
AAA_29
Tropomyosin
ABC_tran
AAA_22
AAA_16
GxGYxYP_C
DUF5053
Motif
Other DBs
NCBI-GeneID:
113498435
NCBI-ProteinID:
XP_026734209
UniProt:
A0A7E5W0S4
LinkDB
All DBs
Position
11:3910104..3920766
Genome browser
AA seq
1304 aa
AA seq
DB search
MAVVKSLKIRGIRSFGPDDSDEQGISFESPLTLILGQNGCGKTTIIEALRYAITSQMPPG
MGHNDCFVHDPKVNRTTEVLAQIKLKLLNSKSRNMEVTRSMKVVLQKKKASFRTLDSLLS
ITDENGKTKDISKRCADLDAVLHDELGVSRAILNAVIFCHQEESGWPLDEGKKVKERFDE
IFDSDKYSNCFDKLKKIRKGYAVEIDKLEDRVSHLEELKKDLENKKMDVINTETKISETE
IKLCEIKKDLKPVEDKLMKIKTLESELTTYDLKLEKLKVRLEQGQLREQELKKEIKNIFE
GSLPELKEKIRNYESTVKAKQKELEESCTKISYFNTEEETVANEKDAFKLKLEKFALLES
QNEKKIVERNKMIVDVAKLAGVEDISTVASQKEAEVAMSAVTKTIKNLEQERSELKALAD
KEEIQKQQLIDESRVALSRHNQQISSKEADVVKNKREVVKLEKEIVAANESKVRLEAAEK
KYKVAEEELEKAEKELNTEECQHQINEEEKVLEKHEHELDEIDKKIAKLQKQSTKLKERE
VKEEMLKQKEKQFTLLKNKHRSTLTELLGNMPEKDYALSLNKLEVALNSEVNTLKQDLND
KKTSVTKLEEERKHVRSTLMERSKQQEKDEEKLYEACGTQSYENTLAKINTTVEKLQDDR
NVLQSSMFVIKKYESQLKSNSCCPLCNRGFDSETEVSDLISQLNTKVMNVPSQLEKVSEQ
LQRESAKKEDLLSMKSLNEKIKTFKENEKPQLEKRLVDVETKINKLTEEIDGLSMSLLEP
EQKLLTVKQIQGDMPLLDRYNQEVRTLTKEFETIKEQCSEVESDITLDEASTRQADLKQK
ISTLRAKIKEAQKKLNVHNKKVQDLSTKKNTLKEECLNLQKKVQEIYNLQETKKQLESDR
EKLIEEINELKVGIAPLEEALKEKVQAKAEVVKNNRASIEIKNNEIMKVSIAFDKVKSIN
HEIKQHIDKNIPLEKTKKEEAIKECEEKLKQIQSDRQATSKRIECLKDEISKEKIYKREL
DDTVRLREVQKNIADFKKEEAVINEKLSTLNRDDLSEKDSLLVKHRKLSNEKAKTDGILD
ELHEILKKYKMDLKTALGKDTEKKYKEKYYELQVTKMLDKDVKDYSVALEKCLMEYHKKK
MESINLIIKELWSKIYSGNDIDYIAIKAEGSMSMESERRKYEYRVVQCKNGIEIDMRGRC
SAGQKVLACLIIRLALAETFSSRFGVLALDEPTTNLDQDNIKSLCMALGEIVQERMMQKN
FMFIIITHDREFIESLGQIDKVTHFFEVSRNDEGKSRVKRVKFC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgttaaatctctgaagatacgcggcattcgaagttttggcccggatgatagt
gatgaacaggggatatcttttgaaagtcctctaactttaatattggggcagaatggatgt
ggtaaaaccactatcatagaagctctgcgttatgccatcacgtcacaaatgccaccggga
atgggacacaacgactgttttgtacatgaccctaaagtaaacagaacgactgaagttttg
gcgcaaataaagcttaagctcctaaattccaaaagcaggaacatggaagtaacaaggtct
atgaaggttgtattacaaaagaagaaggcttccttccggacactagactccttgctgtcc
attactgatgaaaatggtaaaaccaaggatatatctaaaagatgcgctgatttggatgca
gtacttcatgatgaacttggtgtatctagagccatattaaatgctgttatattttgccat
caagaagaatctggctggccgctagatgaaggcaagaaagtcaaagaacgatttgatgaa
atctttgattcagacaaatatagtaattgttttgacaaactaaaaaagatcagaaaggga
tatgctgtagaaattgataaacttgaagatagagttagtcatcttgaagaactaaagaaa
gatttagagaacaagaaaatggatgtcattaatactgaaacaaagatatcagaaactgaa
attaaactgtgtgaaattaagaaggatctgaaacctgttgaagataaactaatgaagata
aaaacattggaaagtgaactcacaacatatgatttaaaactagagaaattaaaagtaaga
ttagaacaaggacaattacgagaacaagaattaaagaaagaaattaaaaatattttcgaa
ggttctttgccggaactgaaggaaaagattcgtaactatgagagtacagtaaaggccaaa
caaaaggagcttgaggagtcatgcaccaaaatatcttatttcaatacagaagaagaaact
gttgcaaatgaaaaagatgccttcaaactgaaacttgaaaagtttgctttgttggagagt
cagaatgaaaagaaaattgtggaaaggaataagatgattgtggatgtcgctaaattagcc
ggagttgaagatatatctacagttgcctcccagaaagaagctgaggtagcaatgagtgca
gtaacaaaaacaataaaaaatctggaacaagaacgcagtgagctcaaggcattagctgac
aaagaagagatacagaaacaacagttaattgacgaaagccgcgtagctctctctcgtcat
aatcaacaaatatccagcaaagaagctgatgtggtcaaaaataaaagggaagttgtaaaa
ttggagaaggaaattgttgcagccaatgagtcgaaagttcgattggaagctgcagaaaaa
aaatacaaagtggcagaagaggaattggaaaaagctgagaaggaattaaacactgaggaa
tgtcaacaccaaattaacgaagaagaaaaagttctagaaaaacacgaacatgaactggat
gagatcgacaaaaagattgctaagttacaaaaacagagtactaaattaaaggagcgtgag
gtaaaagaagaaatgcttaaacagaaggaaaaacagtttacattattaaaaaacaagcat
agatcgacactgactgaactcttaggaaacatgcctgaaaaagattacgctctttctctt
aacaaactagaagttgcgttaaattcggaagtgaatacgttaaaacaagacctaaatgac
aagaagacttctgtaacaaagcttgaagaggaacgaaagcatgttcgtagtacgttaatg
gaacgcagcaaacaacaagagaaagatgaagaaaagttgtacgaggcttgtggcacgcaa
tcttatgaaaacactctagctaagatcaacacaactgtggaaaaactacaagatgatcgt
aatgttctacagtcatcaatgttcgtcatcaagaaatacgaatcacaacttaaatcgaat
agttgttgtcccttatgtaaccgtggatttgatagtgaaactgaggtttcagatttaata
agccaactcaatacaaaagtcatgaatgtgcctagtcaactagagaaagtatctgaacag
cttcaaagagagtcagcaaagaaagaggacctgctaagtatgaaatcattgaatgaaaaa
attaaaaccttcaaggaaaatgagaaaccacaattggaaaagcgccttgttgatgttgaa
acgaaaatcaataaactcacagaagaaattgatggactatcaatgtctttattagaacct
gaacaaaaactgttaacagtaaagcaaatacaaggagacatgcctctattagacagatac
aaccaagaagttagaacattaaccaaagagttcgaaacaatcaaagaacagtgttcagag
gtagagtcagacatcactttggatgaagcttccactcggcaagctgatctcaaacaaaaa
atatcaacattaagagcaaaaatcaaggaagctcagaaaaaactcaatgtgcacaataag
aaggtacaagatctaagtacaaagaagaacacactcaaagaagagtgtcttaatctacag
aaaaaggttcaagaaatttacaaccttcaagagacaaagaaacagttggaatcagacagg
gagaagttaattgaggaaattaatgagttgaaagttggtattgcaccactcgaagaggct
cttaaagagaaagtgcaggccaaagcagaggttgtaaaaaataatagggctagtatagaa
ataaaaaataatgaaattatgaaagtatcgatcgcgttcgacaaagttaagtcaatcaat
cacgaaatcaaacaacatattgataaaaacattccacttgagaaaactaaaaaggaagag
gcaataaaggaatgtgaggagaaacttaaacaaatacagagcgacagacaggcgacgtcg
aagagaatcgaatgtttgaaagatgagattagtaaggaaaagatttataaacgcgaattg
gacgacactgtcagactaagagaagtacaaaagaatatagctgattttaagaaagaagaa
gcggtaataaatgaaaaattaagtacacttaacagagatgatctgagtgagaaggattcg
ttgctggtgaagcacaggaaactttccaatgagaaagctaaaaccgatggtatattagat
gaactacacgaaattttgaagaaatacaaaatggatctgaagactgctcttggtaaagat
acagaaaaaaaatataaagaaaagtactatgagctgcaagtcacaaaaatgttagacaag
gacgtaaaagactactctgttgcattagagaaatgtcttatggagtatcacaaaaagaaa
atggaaagcattaaccttatcataaaggaactttggagtaaaatctacagtggtaacgac
atagattatatagctattaaggctgaaggcagcatgagtatggaatcagaaaggaggaaa
tatgaatacagagttgtccaatgtaaaaatggaattgaaattgacatgcggggaaggtgc
agtgcaggtcagaaagttctagcttgtctcataataagactggctctggcagaaacgttt
agttccaggtttggtgtcctggctttagatgagccaacaacaaatttagatcaagacaac
attaaaagtctatgtatggctctcggtgaaatcgtacaagaacgaatgatgcagaaaaac
ttcatgttcattataattacacacgatagagaatttattgagtcactaggtcagattgat
aaggtcacgcatttctttgaggtatctcggaatgatgaaggcaaatctagggttaagcga
gttaagttttgttaa
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