Trichoplusia ni (cabbage looper): 113498438
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Entry
113498438 CDS
T05757
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03030
DNA replication
tnl03420
Nucleotide excision repair
tnl03430
Mismatch repair
tnl03440
Homologous recombination
tnl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113498438
03420 Nucleotide excision repair
113498438
03430 Mismatch repair
113498438
03440 Homologous recombination
113498438
03460 Fanconi anemia pathway
113498438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tnl03000
]
113498438
03032 DNA replication proteins [BR:
tnl03032
]
113498438
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113498438
Transcription factors [BR:
tnl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113498438
DNA replication proteins [BR:
tnl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113498438
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113498438
MMR (mismatch excision repair)
113498438
DSBR (double strand breaks repair)
HR (homologous recombination)
113498438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
GDH2_N
PAS_8
IBR
Motif
Other DBs
NCBI-GeneID:
113498438
NCBI-ProteinID:
XP_026734216
UniProt:
A0A7E5W1Q7
LinkDB
All DBs
Position
11:3883796..3893993
Genome browser
AA seq
603 aa
AA seq
DB search
MSHKLSEGSLEVIMNGGHYDRPVMQVLGSKKIQGSGANERFRLLVSDGKHSHSFAMLATQ
LNDKLISGELSDYSVVQIDRFVTSLLKNTGKGEKRVMIILDITILSPGSEVGKKLGNPET
WTEESAAAAQASTSAAPRPAPAAPSPQLKPQPTQAPNLDSSLLSAQMTHPISSLSPYQNK
WVVKARVMNKSDIKTWNNARGEGKLFSMDLCDESGEIRATAFKNECDKFYDMIQIDKVYY
ISRCTLKTANKQYTSIKNDYEMTFTPNTVVAECMEDSSTVPSVKYDFLPINDIASKTPDT
LLDIVGVCKSAADLQELTAKSSGKLLKKREVTLVDNSGGAVGLTLWGKEAENFDGSTNPI
LAIKGARLTEFNGSKSLSCLASTMIRQNPDLPEAHKLRGWYDNGGADMEIVNISARAGGY
SGGSSEWISFADAEARQLGAGEKGDYYSLLGVLTFTFADNAVYKACPQEQCNKKLVDQEN
GLYRCEKCNREYPNYKYRLLLAANVSDPTGDQRITAFNEAAEAMLGKNVADIGQMFEYDK
TAYTQMFEEVKFKTFVFKFRTKMETYNDEARLKTTVVSVQPVDFKDANKRLLASIKTLTG
IEV
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaaactttccgaaggatctctggaggtgataatgaatggtggacattacgat
aggccagtcatgcaagtactaggcagtaaaaagattcaaggaagcggtgcaaatgagagg
ttccgattacttgtgtctgacggcaagcattctcacagctttgctatgcttgccacgcaa
cttaatgataagctgatctccggtgaactgtctgattactcggttgttcagattgatcgc
tttgtgacgtcactgctgaaaaatactggcaagggagagaagcgtgttatgataatatta
gatattacaattctttcccctgggagtgaagtgggtaaaaagctgggtaaccccgagacg
tggacggaggagtcagcggcggcggcgcaggcgagcacgtcggcggcgcctcgccccgcg
cccgccgcgccgtcaccgcagctcaagccgcaacctacgcaggcacctaacttggactcc
agcttactgtctgcacagatgacacatcctatctcaagcctaagcccctaccagaataaa
tgggtggttaaggctcgtgtgatgaataagtcggacataaagacatggaacaatgcccgc
ggagaaggaaaattgtttagcatggacctgtgcgatgaaagtggagaaataagagccacg
gccttcaaaaacgaatgtgataaattttatgatatgattcagatcgacaaagtatactat
ataagccgctgcacacttaaaacagcaaataaacagtacactagtattaaaaacgattat
gagatgactttcacaccgaatacagtggtcgccgagtgtatggaagactcgtcaacggtt
ccctctgttaaatacgacttcctaccaatcaatgacatcgccagcaagactccagacaca
ttactcgacattgttggcgtctgcaagtccgccgccgatctccaagagcttactgctaag
agttcaggcaaactactgaagaaaagggaggtcacacttgtcgacaactctggtggcgct
gttggactgacattgtggggtaaagaggctgaaaactttgatggctccactaacccaatt
ttagcaataaaaggtgcccgtctcaccgaatttaacggtagcaagtctctatcttgcttg
gcgagtaccatgatccgccagaacccggatcttcccgaagcccacaagttaaggggctgg
tacgacaacggcggtgccgacatggaaatcgtcaatatctcagccagggctggaggctat
tccggcggcagcagcgagtggatcagcttcgcggacgcggaggcgcgccagctgggcgcc
ggcgagaagggagactactacagcctgctcggagtcctcaccttcaccttcgccgacaac
gcagtgtataaagcctgccctcaagaacagtgcaacaagaaacttgtcgaccaagagaac
ggactgtatcgatgcgaaaaatgcaacagagaatatcctaattataaatatagacttctt
ttggcggctaatgtatcagatcccacgggtgaccagcgcataacggcattcaatgaagcg
gcggaggccatgctcggcaagaacgtggccgacatcggccagatgttcgagtatgacaag
acggcgtacacgcaaatgttcgaggaagtcaagttcaagaccttcgtgttcaagttccga
actaagatggaaacttacaacgatgaggctcgtctcaaaaccactgtcgtaagcgttcaa
ccagtagacttcaaggatgccaacaagagattacttgcaagcataaagacccttacaggc
atagaagtataa
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