Trichoplusia ni (cabbage looper): 113498441
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Entry
113498441 CDS
T05757
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03022
Basal transcription factors
tnl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113498441
09124 Replication and repair
03420 Nucleotide excision repair
113498441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113498441
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113498441
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113498441
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113498441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Phage_Coat_B
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
113498441
NCBI-ProteinID:
XP_026734221
UniProt:
A0A7E5W1R3
LinkDB
All DBs
Position
11:3951538..3955756
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AA seq
404 aa
AA seq
DB search
MADDEQDAKEYRWETGYEKTWEAIKEDEDGLVEGLVAEFAQKAARKAVVPRRGPVRLGMM
RHVLVAVDCSEAMNSQDLKPSRFLCTLKLLEKFVEEYFDQNPLSQLGLLLMKNKRAEKLT
ELSGNVRKHIKSLQGLTEMALSGEPSLQNTLELANRILKPLPAHASRELLVLFASLTTCD
PSDITTTIQALKTEGIRCSVIGLAAEVRICKKLCQDTGGEYGVVLDDVHYRSLLLDSTSP
PPRARALDAGLVKMGFPHSAPPTNQTDPGTNADPPITVCMCHLEEGEGVGGEGHLCPQCR
SKYCSLPAQCRTCGLTLASAPHLARSYHHLFPVDPYEEMPNEGQAQYCFACLRNFTDLDK
QVYRCTRCHEFYCWECESVVSTTLHVCPGCASRPHLYQRLPEAS
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgagcaggatgctaaagaataccggtgggaaacaggttatgaaaagact
tgggaagctatcaaagaagatgaagatggtttggtggaaggactggtggcggagttcgca
cagaaggcggcgcggaaggctgtggtgcctcgtcgaggtccagtgaggctgggcatgatg
aggcacgtacttgtcgctgtagattgttctgaggctatgaactcgcaggatcttaaacca
tcgaggtttctctgtacactgaagcttctagaaaagtttgttgaagaatattttgatcag
aaccctttaagtcaacttggtttactattaatgaaaaataaaagagcagaaaaattgact
gagctttcaggcaatgtaagaaagcatattaagtcattacaaggattgacagaaatggct
ctgagtggggagccatctttacaaaacactctggagttggccaatcgtatccttaaaccc
ctacctgcacatgcctcaagggaacttcttgtattatttgcctctcttactacttgtgat
cccagcgatattactaccaccatacaggcactaaaaactgaaggaattcgttgttctgta
attggtctagcagcagaagtaagaatttgtaagaaattatgtcaagacacgggtggagaa
tatggggtggtactagacgacgtgcactaccgctccctgttactggactcgaccagtccg
ccgccgcgggcgcgcgcgttggacgccggcctcgtcaagatgggctttccgcactccgcg
ccgccgaccaaccagaccgaccccgggactaacgctgacccacccatcaccgtctgcatg
tgtcatttagaggaaggcgagggtgtcggcggtgagggtcacctgtgtcctcagtgtcgc
agcaagtactgctcgctgcccgcgcagtgccgcacgtgtggcctcaccttagcatcggcc
ccgcatctagccagatcatatcatcacttgtttcctgtcgatccctatgaagaaatgcca
aacgagggtcaagcacaatactgttttgcttgcttaagaaacttcacagacctagataaa
caggtatatcgttgtactcgctgtcatgagttttactgctgggagtgcgagagcgtggtc
tctacaacactgcacgtgtgtccgggctgcgcgtcgagaccacacctgtaccagcgactg
ccggaagcctcgtga
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