Trichoplusia ni (cabbage looper): 113498982
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Entry
113498982 CDS
T05757
Name
(RefSeq) uncharacterized protein LOC113498982 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113498982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113498982
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113498982
mRNA degradation factors
5'-3' decay
Decapping complex
113498982
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen_mid
WXG100_2
Motif
Other DBs
NCBI-GeneID:
113498982
NCBI-ProteinID:
XP_026735071
UniProt:
A0A7E5W497
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All DBs
Position
11:complement(7358030..7375124)
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AA seq
1026 aa
AA seq
DB search
MADSFFGFDTSLSNLNDDEGGGEPSEDEYDALNDETFGQGSDEFDWEVEHEQLAEQLESS
RRHNSGGIDDLANTQLEASLSQLVLDETDAPHSRSFSSSVWRHDPVFPTPPTPVPALKNV
CTVEELERQLRQKQQQQTFNQNYFQPRFPPVILQRPPGLQAPVPLPFAPQQPINHGINQM
NQPLNKMINQMGQNNQMIPNHVNPMGQNSFMQNNQIGNQLGNQMGNQFQNNPIGPGGNMM
SQLTQNMSVHQMGQNNQMVNQMGQNLNMTQSMGQLGQNINQMGQNMNQMGQNMNQMGQNV
NQMGQNMNPIGSNQMGQNMSMNQNHMGNNQMSQNHNQMGPNMNQMGQNHSQMMPNGNQFP
GMNQFPHMMGQPRMMAPPPGLPNMPRQNFNSNMPQYNPNFRGPAMQQKPELNQPNMMMSQ
PMLIKNQQQPNNIKNSPSNQMLIQSPQTKNQVLKPKEQKLQRSRVYNNSKIVTPTPQNMT
SQNLVQLIQNTHPMLQFNNSFHNANHHPMLNNRSSALPNAQFNHPMFSQRVNGTFNNRHS
LNGDDASGSDSDEYAGLMTQREKQWLINIQMLQLNTGTPYIHDFYYTVFLERQASKEKEG
VKEAHKANQQNHPFYSGGVKQETHTHRERHNSNRHNSTSEDSGTPRTYVPTQFENSLGKL
QCGSVTAPRKIIDVEVVGGDSAPSRMSRMSRASSVASTTQPHEVPREMKRTKQLLLDIEA
LYLILLRLEELNDPLAISNALILKEREEKQKQLEAAQKEESEQQDLSNLFLKNIESVQRR
PKQESPKSESIDKRQVVNLAVNQKPAPTKNLLDEDKEDLVNKMFAGLLHSDRLQQMLSVR
KGRSLVARFVRRVPGAHARLRGVWARALRALPAAARRDDGGLAALAPHYASYIQTTSGWS
PILESSSLLAEAFDPARTPYALTTSFTLSCVVALIEKASMLINTPEATSNERQWSKFLKT
LARALKNTTLNVARPLQPMPEHRLIHHIKQLESRSTIEILQRGKTATEFADLTKADVSEQ
LIKHLC
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcagattctttcttcgggttcgatacttcgttatcgaacttaaatgacgatgaagga
gggggagaaccttcggaggatgaatatgatgccctcaacgatgagacctttggccaaggt
tccgacgagttcgattgggaggtggaacatgaacagttggctgagcagcttgagagcagt
cgtcgacacaacagtggcggcatcgacgacctcgctaatacgcagcttgaggcatcgcta
tcccagctagtgctggacgagacggacgcgccgcactcgcgctccttcagctccagcgtg
tggagacacgaccccgtgttccccacgccgcccactccagtgccggcactcaagaatgtg
tgcacggtcgaggagctggagaggcaactgcgccagaagcagcagcagcagaccttcaac
cagaactacttccagccaagattcccgccggtcatattacaaaggccgccaggtcttcaa
gcgccggtaccactgccgttcgcgccgcagcaaccgatcaaccacgggatcaaccaaatg
aatcaaccgctcaacaaaatgattaaccaaatggggcagaacaaccaaatgatccccaac
cacgtcaacccaatgggacagaactcttttatgcaaaacaatcagataggcaaccagctg
ggcaaccaaatgggcaaccagtttcaaaataatccgataggaccgggcggtaatatgatg
agtcaactcacgcagaacatgagcgtgcaccaaatggggcaaaacaaccagatggtcaac
caaatgggccaaaacttaaacatgacccagagtatgggtcaactcggacaaaacattaat
caaatgggacaaaacatgaatcagatgggacagaatatgaaccagatgggccaaaacgtc
aatcagatgggccaaaacatgaacccgatcggttccaaccaaatgggccagaatatgtcg
atgaaccaaaaccatatgggtaacaaccaaatgagtcagaaccacaaccagatgggtccg
aatatgaaccagatgggacagaaccacagtcaaatgatgcccaacggcaaccagttcccg
ggaatgaaccagttccctcatatgatggggcaaccaaggatgatggctccgccacccggg
ttgccgaacatgccgagacagaattttaactctaacatgccacagtacaaccctaatttt
cgtggaccagccatgcaacaaaagcccgaactaaaccaaccgaacatgatgatgtcacaa
ccgatgctaataaaaaaccaacagcaaccgaacaacatcaagaactctccaagcaaccaa
atgctaatacagtcaccgcaaaccaaaaaccaggtcttaaaacctaaagaacagaagtta
cagcggagtagggtttataataattcgaaaattgtgactccgacacctcagaatatgact
tcgcagaacctggtccagttgatacagaatactcatcccatgttgcagtttaataatagt
tttcataatgctaatcatcatcctatgttgaataataggagtagtgcgctcccgaatgct
cagtttaaccatccgatgttcagtcaaagggttaacgggacttttaataataggcattcg
cttaacggcgacgacgccagcggcagcgacagcgacgagtacgccggcctcatgacgcag
agagagaaacagtggctcatcaacatacagatgttgcagctcaataccgggacaccctat
atacacgacttctattatacggtattcttagagcgacaagccagcaaagagaaggaaggt
gtgaaggaggcgcataaagcgaaccaacagaaccatcccttctatagcggaggtgtgaaa
caagagacccacactcaccgagagcgacacaactccaaccgccacaactcgacgagcgag
gacagcgggaccccgaggacgtacgtgcctacgcagttcgagaactcacttgggaaactg
cagtgtggcagtgtgacagccccccgtaagatcatcgacgtggaagtggtgggcggcgac
tccgccccgtccaggatgtcgcgcatgtccagagcctccagcgtggccagcaccacgcag
ccccacgaggtaccacgtgaaatgaaaagaacgaaacagctgttactggatattgaagcg
ttgtatctcatattgttacggttagaggagcttaacgaccccctggcgatatcaaacgcg
cttatattgaaggaaagagaagagaaacagaagcagttagaagcagctcagaaggaggag
agcgaacagcaggacctgtccaacctgtttctcaagaacatcgagtctgtccagcggagg
cccaagcaggagagccccaagagcgagagcatcgacaagagacaggtggtcaacctagca
gtgaatcaaaaaccggcccctactaagaatcttctagatgaagataaagaggacctggtg
aataagatgttcgcgggcctactgcacagcgatcgattacagcagatgttgtccgttagg
aagggcaggtcgctggtggcgcgcttcgtgcggcgcgtgccgggcgcgcacgcgcggctg
cgcggcgtgtgggcgcgcgcgctgcgggcgctgcccgccgccgccaggagggacgacggc
ggcctggccgcgctcgcgccgcactacgccagttacatccaaacgacgtccggttggtca
ccgatcttggagtcgtcgagtctgttggcggaggccttcgatcctgcgcggacgccctac
gcactcaccacctcgttcacactaagctgcgtcgtagcattaatagagaaagcatcgatg
ttaataaacacaccggaagcgacatcaaacgagcggcaatggtcgaaattcctgaagact
ttagcgagagcgttgaaaaacacgacactcaacgttgccagaccgctacagcccatgcca
gaacaccggcttatacaccacataaaacaattagaatccagaagtaccattgagattcta
caaagaggtaaaaccgctacggagttcgcggatttgacgaaagcggatgtgtccgaacaa
cttatcaaacatctgtgttga
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