Trichoplusia ni (cabbage looper): 113499169
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Entry
113499169 CDS
T05757
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113499169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnl03400
]
113499169
DNA repair and recombination proteins [BR:
tnl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113499169
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
113499169
NCBI-ProteinID:
XP_026735331
UniProt:
A0A7E5W519
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Position
12:complement(2763309..2772009)
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AA seq
1125 aa
AA seq
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MSKRNSVGASNTLFNYFSKTPPANKKVKAEVEVDKSPKLNTSVNADKGSKVEKKKRERQS
TPSPKPGSDSDDDIPVTNKRRKRIRLNPVDSDDSDAENKADNKMDTSEVEKPSIEKTLQE
SFKFEPSSPKAKKQIKPEKSAPKSGPTVSPPKPIEEKPILADEGNWVHCKLDWLKPDKIK
DAQKRRPDHPDYDPSTLFVPADFYKNQTPAHRQWWEMKSAHFDCVLFFKVGKFYELYHMD
AAVGVNELGFSYMKGEFAHSGFPESAYGRMASTLVSKGYKVARVEQTETPDMMQERCRKT
GQNTKWDKVVRREICQVTMQGAQVCGLQDNGPADPTAAYMMAIAEEESNGCSTYGICFVD
TSIGLFHLGQFQDDKHSSRLLTTLAHYPPALLIYDRKTTTARTTKLLSTHCHSARREPQA
MWTPEKTLKTLAEKYYRTNADGEWPDGIKPFLHEGDALGLTPAANCYLAIKALGGCVSCL
TDCLLDIQVLGMNQFTSYAPPDVLNETLSQELKDENRWEGGSTMVLDAITLRNLRIVQDE
GCLYERLNFCSTHMGKRLLYQWVCAPSCNLSVIKERQEAVKELFENQEICQDAKSILTTL
PDLERLLAKVHALGNLKRSKQHPDARAIFYEEKTYSKRKVLDFISVLNGFTAALKLVELF
NGTDAKLLKRIMQFQPDGKYPDYRDTLKFFKEAFNQTQAEKEGRILPGEGVDQEYDNTIQ
LIKEIEEELKEYLSEQEKYFKCRLSYVGSDKKRYQIEIPQSAAAKAGSKYTMEGARKGYK
RFSTHETKELLARMIAAEEQKTNVLKDLSRRIFEKFSSHYNQWETAVQCLSTLDILLAFT
EFARQQSDGVCLPEITYNEDQKPYINITEGRHPCIANVTDFIPNDTRLGMDGTSLLLLTG
PNMGGKSTLMRQAGLITVLAHLGSYVPAEQCSLSLVDRIFTRLGASDDIFSGQSTFLVEM
NETAAIIRHATLQSLVLLDELGRGTSTYDGTAIASGVCAALADRACRVIFSTHYHSLVHH
LSAHPGIMLGHMACMVETDESTPDSEDQIPEETITFLYKLSPGACPKSYGFNAARLAGIP
KEITLRAHKISKNLEKEATCVRAFRDILKFEKTSDVRSMLAALSI
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacggaatagcgtaggggcttccaatacactgtttaattatttttctaaaacc
ccgccagcaaataaaaaggttaaagcagaagtggaagttgataaaagtccgaaactaaac
acgtccgtaaacgccgacaaaggatctaaagttgaaaagaagaaaagagagagacaatcc
actccatctcctaaaccaggcagtgacagtgatgatgacattcctgttaccaacaaacgc
aggaagaggattcggctcaaccctgtggattcagatgattctgatgcagagaacaaagca
gataacaaaatggatacatcagaagttgaaaaaccatctatagagaagacattgcaggag
agttttaaatttgaacctagctcaccaaaggctaagaagcaaattaaacctgaaaagtct
gcccctaagagtggtccaacagtgtcacctccaaaaccaattgaagagaagccaatacta
gctgatgaaggtaactgggtacattgtaagttggactggttgaagccagataagatcaaa
gatgctcagaaaaggagaccagaccaccctgattatgacccttcgacgttatttgttcct
gctgacttttataagaatcaaactcctgcgcaccgccaatggtgggagatgaaatcagct
cacttcgattgtgttttgttcttcaaagttggcaagttctacgaattgtatcacatggat
gcagctgtaggggttaatgaacttggattctcgtatatgaagggagaattcgcgcattcc
ggattccctgaaagtgcttacggaagaatggcatctactttagtctctaaagggtataaa
gtggcgcgtgtggaacagacagagacgccggatatgatgcaagagagatgtagaaagacg
ggtcaaaacacgaaatgggataaggtggtccgtcgcgagatatgccaggtgacgatgcag
ggcgcgcaggtgtgcggtctgcaggacaacggccctgccgaccccactgccgcgtacatg
atggcgatagctgaagaggaaagcaacggctgcagtacttacggcatatgcttcgtggac
acgtcaataggtttgttccacttggggcagttccaagatgacaagcattcgtcgcgactg
ctcactacactggcgcattatccaccggcattgctaatatacgaccgtaaaacaacaaca
gctcgtacaactaaattgctgagtacccactgccacagtgcaagacgagagcctcaagcc
atgtggacccctgaaaagaccctcaagacgttagcggaaaagtattataggaccaacgct
gatggagagtggcccgacggtattaagccattcctgcacgaaggcgatgctttaggccta
acgccagctgcgaactgctacctagccatcaaagcattaggaggctgcgtttcctgccta
acagactgccttctcgacatacaagtattaggcatgaaccaatttacctcctacgcacct
cccgacgtgctaaacgagaccttatcgcaagagctgaaggatgaaaatcgctgggaaggc
ggcagcacgatggtcttagatgctattacgttgaggaacttaagaattgttcaggatgaa
ggatgcctgtacgaaaggttgaatttctgttcaactcatatgggaaagaggttactttac
caatgggtttgcgcaccaagttgcaatctgtcggtgatcaaagagagacaggaagcagtg
aaggagctatttgaaaaccaggagatctgccaagacgctaagagcatactaactacacta
cccgatttggaaaggctattggccaaggtccacgcattaggtaacctcaagcgatcgaaa
cagcatcctgacgcgagagcaatcttctacgaagagaaaacttattctaaacggaaagtt
ttagactttatatctgttttaaacgggttcaccgcggctttgaaacttgttgagttgttt
aacggtactgatgctaaactcttgaagcggatcatgcagttccagcccgatgggaagtat
cccgattatagagatactttgaagttttttaaggaagctttcaatcaaacacaagctgaa
aaggaaggtcgtatattaccgggcgagggtgttgatcaagagtacgataataccatccaa
cttattaaggaaatcgaagaggaattgaaagaatacctcagcgaacaagaaaagtatttt
aaatgtcggttatcttacgtgggcagcgacaaaaaacggtatcaaatagagataccacaa
agcgctgctgcgaaagctggctccaaatacactatggaaggcgctaggaaaggatataaa
cgattctccacccatgaaacaaaggagttgctagcacgcatgatagctgctgaagagcaa
aagacgaacgtcttaaaagacttgagtcgtcgaatattcgagaagttctcctcacactac
aaccaatgggagaccgctgtacaatgcttatcgacgttggatatcttgctggcattcact
gagttcgcgaggcagcagagcgatggagtttgcttaccggagatcacgtataatgaagat
caaaagccttacataaacataacagagggtcgtcacccgtgcatagcaaacgtaacagac
tttattcctaacgatacgcggttgggtatggacgggaccagcctcttactactgactggt
cccaacatgggcggcaagtccacgctcatgcggcaagctggactcatcactgtgttggca
catttgggtagctacgtaccagcagagcagtgttccctaagcctagtggaccgtatcttc
acgcggctcggcgcctcagatgacatcttctccggacagtccacattcctcgtggaaatg
aacgagacagcagctatcattagacatgcgactttacaatctcttgtactgcttgatgag
ttgggtcgcggcacgtccacgtacgacggcacggccatagcgtcgggcgtgtgcgcggcg
ctggcggaccgcgcctgtcgcgtcatattctccacgcactaccactcactcgtacaccat
ctgtctgcacatccggggatcatgttgggacatatggcgtgcatggtagaaacagacgaa
tcgacaccggacagtgaagaccagatccctgaagaaacgataacattcctttacaagttg
tcccccggcgcttgtcccaagtcctacggttttaacgccgcacgcctcgctggcatacct
aaggaaataactctaagagcacacaaaatatccaaaaacttggagaaagaggccacgtgt
gtgcgggcctttagggatatcttgaaatttgaaaagacaagcgatgtccgctctatgttg
gcagccttgagtatttaa
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