KEGG   Trichoplusia ni (cabbage looper): 113500325
Entry
113500325         CDS       T05757                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03030  DNA replication
tnl03410  Base excision repair
tnl03420  Nucleotide excision repair
tnl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    113500325
   03410 Base excision repair
    113500325
   03420 Nucleotide excision repair
    113500325
   03430 Mismatch repair
    113500325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tnl03032]
    113500325
   03036 Chromosome and associated proteins [BR:tnl03036]
    113500325
   03400 DNA repair and recombination proteins [BR:tnl03400]
    113500325
DNA replication proteins [BR:tnl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    113500325
  DNA Replication Termination Factors
   ELG1-RFC complex
    113500325
Chromosome and associated proteins [BR:tnl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    113500325
DNA repair and recombination proteins [BR:tnl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     113500325
  Check point factors
   HRAD17(Rad24)-RFC complex
    113500325
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 RCF1-5-like_lid Viral_helicase1 MeaB AAA_19 AAA_11 AAA_18 Mg_chelatase nSTAND3 RuvB_N AAA_24 Rad17 IstB_IS21 AAA_assoc_2 NTPase_1 MipZ AAA_25 ABC_tran AAA_5 AAA_3 AAA_30 RNA_helicase CbiA DNAX_ATPase_lid AAA_28 AAA_23 AAA_7 ATPase_2
Other DBs
NCBI-GeneID: 113500325
NCBI-ProteinID: XP_026736875
UniProt: A0A7E5W8B9
LinkDB
Position
13:10674229..10676954
AA seq 352 aa
MSDTDVMEVDEIPSKPSKSQVGSSGSKAVSHLPWIEKYRPITFSDVVGNEDTVSRLAVFA
RTGNAPNIIIAGPPGVGKTTTILCLARALLGASFRDAVLELNASNDRGIDVVRNKIKMFA
QQKVTLPPGRHKMVILDEADSMTEGAQQALRRTMELYSHTTRFALAANNSEKIIEPIQSR
CAVLRYSRLTDAQILAKVLEVCEKEQLSYTEEGLNAVVFTAQGDLRAALNNLQATAQGFA
HVSADHVFKVCDEPHPMLVRGMLAACARRDIHEAYKVIAKLCKLGYAAEDIVSNVFRVCK
TLDVDEATRLAFAREVGLTQLRVADGLSSPLQLAGLLARCCRAAAPPPRSGF
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgagtgataccgatgtaatggaagtggatgaaataccatcaaagccttccaagtcccaa
gttggcagcagcggctcgaaagcagtatcccatttaccgtggatagagaagtaccggcct
ataacgttcagcgatgttgttggcaatgaggacaccgtgtcgaggctggccgtgttcgcg
cgcacggggaacgcgcccaacatcatcatcgcgggcccgcccggcgtgggcaagaccacc
accatcctatgcctggcgcgcgcgctgctgggcgcctccttccgcgacgccgtacttgag
ctcaacgcctctaacgaccgcggcatcgacgtcgtgcgcaacaagatcaagatgtttgca
caacaaaaggtgacactaccacctggacgacataagatggtgatcctggacgaggcggac
agcatgacggagggcgcccagcaggcgctgcgccgcaccatggagctgtactcgcatacc
acgcgcttcgctctggccgccaacaactccgagaagattatagagcccatacagtcgcgc
tgcgcggtactgcggtactcgcgcctcactgacgcgcagatactcgcaaaggtcttggag
gtgtgcgaaaaggagcagctgtcgtacacggaggaggggctgaacgcggtggtgttcact
gcgcagggcgacctgcgcgccgcgctcaacaacctgcaggccacggcgcaaggcttcgcg
cacgtcagcgccgaccacgtgttcaaggtgtgcgacgagccacaccccatgctggtgcgg
ggcatgctggccgcctgcgcgcgccgcgacatccacgaggcctacaaggtcatcgccaag
ctgtgcaagctgggctacgcggccgaggacatcgtcagcaacgtgttccgcgtttgcaag
acgctggacgtggacgaggccacgcggctggcgttcgcgcgagaggtggggctgacgcag
ctgcgcgtggcggacggcctgagctcgccgctgcagctggcgggtctgctggcgcgctgc
tgccgcgccgccgccccgccgccccgtagcggcttctga

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