Trichoplusia ni (cabbage looper): 113501011
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Entry
113501011 CDS
T05757
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tnl04812
]
113501011
Cytoskeleton proteins [BR:
tnl04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
113501011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Katanin_con80
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_SCAP
eIF2A
Beta-prop_IP5PC_F
PEP5_VPS11_N
Beta-prop_NWD2_C
Beta-prop_LRRK2
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
Beta-prop_WDR75_2nd
PROPPIN
CoV_NSP15_C
Motif
Other DBs
NCBI-GeneID:
113501011
NCBI-ProteinID:
XP_026737782
UniProt:
A0A7E5WBI4
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Position
15:complement(7590885..7596521)
Genome browser
AA seq
797 aa
AA seq
DB search
MESIRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT
TPVECVCFGHSEDLVCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYGDYLTTG
SCDSNVKLWDTRKRGCIVTYSSHRLAVNSLQFSPDGQWIASACEDGLVKVWDVRVGKVLQ
EFVEHTSAVTCVKFHPHEFLLASCGTDRTVNFWDMEKFQLVSKFEKDNTSIRHMVFSDDG
ATLLGCANDGLHVIGWEPARVFDTVHGHWGQIHDITVAQTQLIAGSFHSTYVVLSVVDLN
KVHPFGGPPPLSPPVVRDLSPFQKGHSVRKSFSKEKPPKEVMHRPTLLDEKTAEESTSGT
EADEDSGAVISNFNDYTEIFRPSRALTRTPPPATSLSSEDYSIPGEIPQEPMEKSEPTVS
TALRDLMLDEPVPLTRPLPQPSPPQRQRSEHYSRIPTSTKEHYNVEQKKVENFQPRVMDN
TKENNTFATSHSLRDYAASPLTANSLNRHNSYKETKSTTDLSSTNLRPSNSEISLGPPTL
GPRSLSFTRTATEATRRRVVETVVRESVAVSRSVEAPEAEPEPEFVPYTTDRPVGLDLDE
FLPRGLAGLGVRRGARGAGAEPSEQEVLGVMMRGHDSMMAVLTARQRALQIFHSVRINKS
LRSALESVIALEDTSVILDILNVMAHKPSLWNLDICLLMLPKIYELLQSKYESYMQCGCN
ALRLIVRNFSSVVRANVSAPVRTLGVDIPREERYAKCMQIHRLLLDVRAFLLKRQTLQGR
LGAAFRDLHNLMQQGLD
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggagagtattcgacgatcatggaaactgcaggagtttgtggctcacaaagcgaatgtc
aattgcctagccatgggtcacaagtcgaaccaggtgttggcgactggtggcgatgataaa
aaagtcaatttatgggccattggaagacaaagttgcttgatgagtttgagtgggcacaca
actcctgttgaatgtgtatgttttggccattctgaagacctagtttgtgcaggatcacaa
accggtgccttaaagatatgggacttagaagcagctaaattattaagaacattcacagga
cacaaaggggctatcaaatgtatggactttcatccatatggtgactacttgactactggc
tcttgtgacagcaatgttaagttatgggacactaggaaacgaggatgtattgtaacttac
tcaagccaccgccttgccgtcaatagtctgcagtttagccctgatggacaatggattgct
tctgcttgtgaagatggtttagttaaggtgtgggatgttcgagttggcaaagtacttcaa
gagtttgtggaacacacttcagcagtaacctgtgtgaagttccaccctcatgagtttcta
cttgccagctgtggcactgacagaactgttaacttctgggacatggaaaagttccaattg
gtatctaagtttgaaaaagacaacacatccatcagacacatggtgttcagtgatgatggt
gcaacattgcttggttgtgcaaatgatggcttgcatgtcattggctgggagcctgccaga
gtgtttgacactgttcatggacattggggacaaattcatgatataactgtagcacaaaca
caattaatagctggttcattccattcaacttatgtggtgttatcagtggttgatctcaat
aaagttcatccatttggaggtccacctccattatccccaccagttgtcagggatctctca
cctttccaaaaggggcattcagtacgcaaaagcttctcaaaggaaaaaccacccaaggaa
gttatgcatagaccaactctacttgacgaaaaaacagctgaagaatctacatcagggaca
gaagcagatgaggattcaggtgctgttatatcaaattttaatgactacactgagatattc
cgcccttctagagcattgacacgtacgcctccaccagctactagtttatcttcggaagac
tactcgataccgggtgagataccccaagagcctatggagaagtccgagccgacggtgagc
accgccctccgggacctgatgctggacgagccggtgcccttgacgcggcctctcccgcag
ccctcgccgccgcagcgccagcgatcagaacactactcgcggatccctacatccaccaaa
gaacattacaatgttgaacagaagaaagttgaaaatttccagccgcgggtgatggacaac
actaaagaaaataatacgttcgcgacatcgcattcattaagagattatgccgccagcccg
ctcacagcaaattcgcttaatcgacataattcctacaaagaaaccaaatctaccacagac
ttatcatccacgaacctccggccaagcaatagtgaaatatctttaggtcctccaacatta
gggcctaggtcattgtccttcaccagaactgctacagaggctacgagaagacgagtagta
gagacagttgtaagagaaagtgtcgcagtatctcgcagtgtagaggcccctgaagctgaa
ccagagccggagttcgtaccgtatacgaccgatagacctgttggactcgaccttgacgaa
ttcttgccacggggtctggcggggctgggcgtgcggcgcggggcgcgcggcgcgggcgcg
gagcccagcgagcaggaggtgctgggcgtcatgatgcgcggacacgactccatgatggcc
gtgctcaccgcccgccagcgcgcgctgcagatatttcattccgtccgaattaataaaagt
ctgagatctgctttagagtctgttatcgcattagaagatacttctgtcatactcgacatt
ctaaatgttatggcacacaaaccatctttgtggaatttggacatttgcttattaatgttg
cctaagatatatgaattacttcagagcaaatatgaatcatatatgcaatgtggttgcaat
gccttgagactgatagttcgcaacttttcatctgtggtgagggctaacgtaagtgctcca
gtgcgcacattaggtgttgacataccgcgcgaggagcgctacgctaagtgcatgcagata
catcgactgctacttgacgtccgagccttcctgctcaaacggcaaacactccagggacgt
ctcggagctgcgtttagagatcttcataacctcatgcaacagggcctcgactga
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