Trichoplusia ni (cabbage looper): 113501210
Help
Entry
113501210 CDS
T05757
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl04382
Cornified envelope formation
tnl04512
ECM-receptor interaction
tnl04518
Integrin signaling
tnl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113501210
04518 Integrin signaling
113501210
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113501210
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113501210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tnl04147
]
113501210
00536 Glycosaminoglycan binding proteins [BR:
tnl00536
]
113501210
Exosome [BR:
tnl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113501210
Glycosaminoglycan binding proteins [BR:
tnl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113501210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113501210
NCBI-ProteinID:
XP_026738080
UniProt:
A0A7E5WBL6
LinkDB
All DBs
Position
15:complement(7519096..7529881)
Genome browser
AA seq
1833 aa
AA seq
DB search
MAVSVLWLVAALAPLLGVYGQQNYDPYREYDQRETDQYPIDDRQNLYPQPPRPTYDNLYP
PPQRPSYENLYPPPQRPTYGLSNRLDIPSPSAVSSSSTRGQSFTVYDPVTRRRTSEKNCT
APGCCQPKCFAEKGNRGIPGMPGPPGISGFPGHEGPEGPQGSKGQKGQMGNPGPRGPKGD
RGKPGERGFVGRIGPAGPQGEPGAPGIHGRDGCNGTDGEPGMKGPQGLSGPRGYPGSKGD
KGDKGEAAYTGRYPKGQKGEPGADGMQGKPGHVGPTGLPGLEGPKGNQGPTGPPGLKGDK
GLKGSKGLAIQGDKGDRGDPGDKGSSCPPVTLPSQGDKGAIKGIQGDMGWKGDKGEPGPM
GDKGDEGIMGEPGRAGQMGIKGEKGIIGNPGERGRDGMYGNPGPRGQKGDRGNDGLPGLD
GRPGSKGEPGRDGLPGPRGLKGVQGPSGGRTGSAGPPGPPGQRGYPGRPGPKGTDGLPGD
KGDLGPMGPPGGQGEPGEPGIEGLAGPKGDKGETGRDGTQGEPGPRGFDGPQGPVGPRGP
KGEDGISIPGQKGDSGYNGQPGSKGQKGEKGYIGLRGFPGNSSLGTPGSPGEIGPPGEKG
EKGNPGFDGIPGSPGAKGDIGGRCNDCRPGGPGPKGDRGSDGYPGLQGDRGPPGPPGLTG
ERGADGLNGSPGEAGAPGERGDDGPIGPPGERGADATFAVSNLVKGSPGERGERGPPGPM
GPKGEKGSLGSKGNQGQIGMPGQKGDHGLMGPPGTDGTPGSNGIPGAPGKNGESIKGEKG
APGNFGQKGDKGFPGRMGLKGVAGQCPANLEALTRGDPGAPGAPGPQGPPGEPGEKGDRG
FSGLPGSKGEMGLPGKQGPVGPRGIPGERGDTGEMGSIGFPGTPGETGPRGYPGEPGFKG
DKGELGLPMPGPPGPSGLPGLKGDKGNRGTPGTPGPDGLTGPVGLPGEKGDQGQFGRPGY
AGAPGQKGEPGPIGPPGVPGTPGAPGRDGPKGQQGYPGLVGKPGVIGLPGNKGEPGIQGI
PGQKGYPGSRGRAGRNGAPGIPGAPGEKGDKGDLGFTGQPGAPGFDGPMGPIGQPGFKGD
MGPPGQPGFPGKMGSPGEKGDRGYQGLTGAKGEPGLASDKGDKGEAGMPGLPGLDGRPGA
PGDKGDIGQPGLDGFGIPGVRGEKGDLGKPGLDGLPGATGEKGDRGFVGLKGDKGLTGLP
GDVGSPGMPGMNGPPGFKGDMGLPGRDGAKGDKGDIGFPGRDGFDGLMGPKGATGPMGPP
GIMGFQGPKGDRGLPGVSINEKGDKGEIGLPGITGMKGQKGERGLTGEQGLTGEKGDRGF
EGQKGDTGLMGIIGEKGDRGPAGPTGSPGLTMVGEKGLPGIPGKHGRPGLPGSIGQKGEV
GLPGLPGQVGLPGTPGTVGPKGEKGDTGREGVAGPPGYDGTPGSLGPPGPRGEKGDRGEK
GATGIGLPGEKGDQGYPGIPGLIGQKGDKGERGYNGIDGEMGSQGPPGMKGERGLPGRTG
LTGEQGEKGDKGEAARFVFGPKGEPGMPGAPGLDGAPGRDGAPGPPGLDGLPGMKGDRGF
QGQVGPQGPVGPPGLQGFQGDRGEVGLTGQQGLPGPPGAPCVETDYLTGILVVRHSQGDY
VQECNNGLIKLWEGYSLLYIDGNEKAHSQDLGHAGSCVRKFSTMPFLFCDINEVCNYASR
NDRSYWLSTNEETPMSPVEGKDIMRYISRCVVCEAPANVIAVHSQSNSIPECPQGWTELW
IGYSFVMQTSAGGQGGGQALESPGSCLESFRAVPFIECNGEGGTCNKFSDKLSFWLTTIR
DEEQFTMPERQTLKSGNLLERVARCAVCMKNTK
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtccgtgctatggttggtagctgcgttagcaccgcttctaggagtttatggt
cagcaaaattatgatccataccgagaatatgatcaaagagagacggatcaatatccgata
gacgacaggcaaaacttatatccacaacctccgagaccgacatatgacaacttatatcca
ccgccccagaggccgtcatatgaaaacttatatccaccacctcagcgaccgacttatggc
ttgtctaatcggttagacataccgtcgccatcagctgtgagttcttcttccacgagaggt
caaagctttaccgtatacgatccagtgactcgacgacgcacttcggaaaagaactgtact
gccccaggatgctgccaaccgaaatgctttgcggaaaagggaaacaggggtatcccagga
atgccaggacccccaggtatcagtggttttcctggtcacgaaggtccagaaggcccacaa
ggttctaaaggacaaaaaggacaaatgggaaacccaggtccgagaggccctaagggtgat
agaggtaaacctggtgaacgtggattcgtcggaagaattggtccagctggtccccaagga
gaaccgggtgcaccaggtatccacggcagggacgggtgcaatggtaccgatggtgaacct
ggaatgaaaggtccacaaggtttgtcaggtcctcgcggatatcctggatctaaaggagat
aaaggtgacaagggtgaagctgcttacactggaagatatcctaaaggacaaaagggtgag
cctggcgccgatggaatgcaaggaaaaccaggtcatgttggtccgacaggtctacctggc
ttagaaggacctaaaggcaatcaaggacctacgggtccacctggtttaaaaggtgataaa
ggtttaaaaggttcgaaaggattagcaattcaaggtgataaaggagatcgtggtgaccca
ggtgacaaaggttcaagttgccctcctgttactttgccttcgcaaggtgacaaaggcgct
atcaaaggaattcaaggtgacatgggttggaagggtgacaagggtgaacctggccccatg
ggtgataaaggggatgaaggtattatgggtgaaccgggtcgcgcaggacagatgggaatt
aaaggagaaaaaggaattataggaaatcctggtgaaagaggccgtgatggaatgtacggt
aacccgggccctagaggacaaaagggagacagaggaaacgatggcttacctggtttggat
ggaagacctggaagtaaaggtgaacctggcagagatggattaccaggtcccagaggttta
aaaggagttcaaggtccttcaggaggtcgtactggatcagctgggccacctggacctccg
ggtcaaagaggttaccccggtagacctggacctaaaggaactgatggactgcctggagat
aagggtgatttaggaccaatggggccacctggaggacagggtgaacctggtgaacctggt
atcgaaggtctagctggtcccaaaggagacaaaggtgaaactggacgtgacggaactcaa
ggagaaccaggaccacgcggtttcgatggaccgcaaggacctgttggtccaagaggtcca
aagggtgaagacggaatttcaatacccggtcaaaaaggagacagtggttataacggacaa
ccgggttcaaagggccaaaagggtgaaaagggatacataggactacgtggatttccagga
aactcaagcttagggacacctggtagtccaggagaaattggtcctccaggagaaaaagga
gaaaagggtaatccaggttttgatggaataccaggtagcccaggagcaaaaggcgatatt
ggtgggcggtgtaatgactgcaggccaggtggtccgggaccaaaaggagatcgtggttca
gatggataccctggtttgcaaggagaccgtggaccccccggtcctcctggacttacaggt
gaaagaggagcagacggtttgaatggttcacctggtgaagcgggtgccccgggagaacgc
ggtgatgatggacctataggaccccctggtgaaagaggagctgatgctacatttgctgtt
agtaacttagttaaaggatcacctggtgaacgaggtgaacgtggacctcctggcccaatg
ggtccaaaaggtgaaaagggaagtttgggatctaaaggaaatcaaggtcaaatcggtatg
cctggccaaaagggtgatcatggccttatgggtccgcctggaactgacggcactcctggt
tcaaatgggattcctggtgcacctggcaagaacggagaatcaattaaaggagagaaaggt
gctcctggtaatttcggacagaaaggagacaaaggattcccaggacgaatgggtctcaaa
ggagtagctggtcaatgtcccgcgaacctcgaagcactaacgagaggcgaccctggagct
ccaggagcacctggccctcagggacccccaggtgaaccgggtgaaaagggggacagaggt
ttttctggtctaccaggatcaaagggtgaaatgggattgccaggcaaacaaggccccgtt
ggaccacggggtattccgggagaaaggggagataccggagaaatgggttcaattggattc
ccaggaacaccaggagagacaggcccaagaggttacccaggtgaaccaggtttcaaggga
gacaaaggtgaacttggccttcccatgccaggtccacctggtccatctggattgcccgga
cttaaaggtgataaaggcaacagaggaactccaggcacacccggccccgatggtctcact
ggtccagtcggtttacctggtgaaaagggagatcaaggacaatttgggcgacctggttac
gcgggtgcccctggacaaaaaggtgagccagggcctatcggaccacctggagtacctggc
acccctggcgcacccggaagagatggaccgaaaggacaacaaggatacccaggtcttgta
ggcaaacctggggtcataggattacctggtaataagggtgaacctggaatacaaggaatt
cctggacaaaaaggataccctggaagccgaggtcgtgcaggtagaaacggtgcaccagga
attcctggggcgcctggagaaaaaggtgacaaaggagacttaggatttactggtcaaccc
ggtgcaccaggttttgatggacctatgggacctattggtcagcctggctttaaaggagat
atgggacccccgggacagcctggattccctggtaaaatgggatcgcctggtgaaaaggga
gacagaggctatcaaggtttaactggagctaaaggagaacctgggttggcatctgataaa
ggagacaagggagaagcaggtatgccgggacttccagggctggatggtcggccaggtgct
ccaggagataaaggagatattggtcagcctggtttagatggttttggtataccaggtgtt
cgaggtgaaaaaggtgatcttggcaagccaggacttgatggacttccaggagcaactggc
gaaaagggagacagaggttttgtgggacttaaaggtgataaaggattaacaggtttacca
ggtgatgtcggatctccaggtatgccaggaatgaacggtcctccaggtttcaagggtgat
atgggtcttcctggacgcgatggtgctaaaggtgataaaggtgatataggttttccagga
agagatggatttgatggtcttatggggccaaaaggtgcaactggtcctatgggccctccg
ggtattatgggattccaaggccctaaaggtgacagaggactcccaggtgtatcaattaat
gaaaaaggagataagggagaaattggtttacccggcatcactggaatgaaaggacagaaa
ggtgaaagaggacttactggcgaacaaggtttaactggggaaaaaggagatcgaggtttt
gaagggcaaaaaggagacactggcttaatgggcataattggagaaaaaggtgatcgagga
cctgccggtcccacaggatccccaggcttaacaatggtgggagaaaaaggtttgccaggt
attccaggcaaacacggccgtccaggtctgcctggttctatcggacaaaaaggagaagta
ggtctacctggtcttccaggccaagttggtttacctggcacgccaggaactgtaggacct
aagggagaaaaaggtgatacgggtcgagaaggtgtagctggtccacctggatatgatggt
acaccaggtagccttggacctccaggaccaagaggagaaaagggagatagaggtgaaaaa
ggagcaacaggtattggtttgcctggcgagaaaggagatcaaggatatccgggtattcca
ggtctaataggacaaaaaggtgacaaaggtgagcgaggatataacggtattgatggtgag
atgggatctcaaggcccgccaggaatgaaaggtgaacgtggattaccgggaagaactggt
ttgactggtgaacaaggtgaaaaaggagacaaaggtgaagcagctcgctttgtatttggg
cctaaaggagaacctgggatgcctggagcacctggacttgacggtgcacccggaagggat
ggagctcctggtcctccaggattagatggactaccaggtatgaagggtgatcgtggcttc
caaggtcaagtaggaccacaaggacctgttggtccaccaggtctccaaggattccaagga
gaccggggagaagttggtttgactggacagcaaggtttgccaggacccccgggagctcct
tgtgtcgaaacagattacttaactggtattctagtagtacgtcacagtcaaggtgactat
gttcaagagtgcaataatggcttaataaaactgtgggagggatattccttgctttacata
gacggcaacgaaaaggctcacagtcaggacttaggccatgctggttcatgtgtaaggaag
tttagcaccatgccattcttattctgtgacataaatgaggtgtgtaattatgccagccga
aacgaccgaagttattggctttcaacgaatgaggagacaccgatgagtccggtagaagga
aaggacattatgagatatatatccagatgcgtagtttgcgaagcacccgccaatgtcata
gccgttcacagtcagtcaaacagtattccggaatgtcctcaaggatggactgaactctgg
atcggatacagttttgttatgcaaaccagtgcaggtggccaaggtggtggtcaggcttta
gaaagccctggatcatgtttggaaagcttccgtgcggtaccatttatcgaatgtaatggt
gagggcggcacatgcaacaagttttcggataaacttagtttttggttaacgaccatcaga
gacgaggaacagtttacgatgccagagcgacaaacattaaaatcaggaaatctactggag
cgtgttgctcgatgtgcagtttgcatgaaaaacaccaaatag
DBGET
integrated database retrieval system
