Trichoplusia ni (cabbage looper): 113501211
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Entry
113501211 CDS
T05757
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl04382
Cornified envelope formation
tnl04512
ECM-receptor interaction
tnl04518
Integrin signaling
tnl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113501211
04518 Integrin signaling
113501211
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113501211
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113501211
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tnl04147
]
113501211
00536 Glycosaminoglycan binding proteins [BR:
tnl00536
]
113501211
Exosome [BR:
tnl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113501211
Glycosaminoglycan binding proteins [BR:
tnl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113501211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113501211
NCBI-ProteinID:
XP_026738081
UniProt:
A0A7E5WD26
LinkDB
All DBs
Position
15:7529952..7556329
Genome browser
AA seq
1799 aa
AA seq
DB search
MSGPARARFLALHLVPATLLLLLRNPTPTSAVVCNQTVCDCAGIKGDVGSVGPPGVPGLQ
GDYGEDGPIGRPGRPGEAGDIGDRGDLGDKGTQGIRGPYGPRGDTGPQGPYGPQGVPGLE
GFDGCSGIDGIMGPPGPMGDVGERGSPGRGGEKGDQGAAGDGGVNSRGAKGDSGELGRQG
VPGPPGVMGFRGDSGPQGPVGDEGLQGIRGEPGDRGKEGDDTIGPPGEKGDQGPVGEPGR
PASIIVTSEVRQNITIITKGNKGQKGLKGQRGVKGLKGMIGSIGPRGTDGLPGIQGYKGD
QGHDGPRGKVGHRGRDGNPGPKGDKGAPGFAGPDGADGYRGERGEDGMPGNPGLQGYAGE
PGIYDDKLDVPPVPGPMGPQGPEGFVGPIGAPGYPGRRGLPGVVGPPGLPGIKGTQGRQG
IPGTSTKGEPGNDGFKGFPGYRGPSGFEGPSGVVGPRGFKGSKVIGPVGEEGSPGLDGIP
GQRGDRGESGDMGPSGYPGTGVHGVGPPGEEGPPGFPGQSGDPGSPGRPGFLGPKGERGD
DCPYCKSGSDGPKGQRGDYGFNGQKGYPGLEGIPGARGIKGFGGIPGLKGPKGPKGNKGI
AGGAGPQGSKGPKGRVIFDPPLAQIKAEVGPRGDRGFMGYPGMPGDAGWPGRAGEIGFMG
IKGQMGDDGFPGRPGRNGTRGRDGLPGRPGRPATVPIHFLVGQKGEPGLKGLSGEPGEDG
PPGEPGESLAYGINTKGPKGYPGLSGQKGLPGLKGERGELGFDGLPGLAGDQGLPGRSQR
GEKGFKGFIGIKGSIGPYGIPGARGQQGLKGFPGNPGKKGARGDAGPAILVGEKGFDGIP
GVRGDDGDEGYSGVPGRTGSMGPKGIQGPTGDLGPDGPQGPQGRKGMSGIEIRGAPGMSG
RPGRPGRIGIVGEPGLQGSNGIPGDMGPKGMKGNTGYMGFIGMRGENGPPGPDGFPGLAG
IVGNKGDQGERGDTGANGFDGEPGSIGPIGSPGQKGDQGDIGPDGLPGTDGRPGFKGGRG
DVGFPGLPGARGENSLRGMKGDGGQPGLNGIPGRPGLKGFKGIVGDIGSPGVIVTGEPGI
KGEKGNDGYPGRNGAVGRKGDQGDIGLIGERGEDGGKGFPGRPGRPGRHGSVGLKGQQGE
FGLTGNSGQKGDEGMVGRPGRIGSPGLPGEVGNEGPPGVQGFTGAKGVQGDMGLTTYVAP
TKGDIGDIGMEGLPGEPGDTGDIGYVGYVGRKGDRGDVGYQGQVGDTGIPGYRGSTGDQG
PPGLPGINAENAPRGEQGKPGFDGLPGWPGPRGQKGKPGEYGINGPDGLPGPPGLSFQGP
KGMTGMDGAPGQQGMPGRPGREGFEGSPGMRGFQGDTGEIGDSYSPKGERGDQGQPGFYG
AIGQKGELGDNGIDGRRGREGLAGVKGFRGDEGEEGFYGQAGLKGIKGDAGDTVDIFDIK
PGPLGDIGPNGFNGQPGQDGKPGAFGRNGVPGSKGERGDIGFPGRAGPQGLMGREGLKGI
KGLQGYQGNRGITGNAGIPAVQPMPKSRGFYFTVHSQKRMIPQCPAGTSPLWSGYSLIHI
LANGKAHGQDLGASGSCLRKFSTMPYMFCNINDVCNLAQREDFSFWLSTPEPMPMSMTPI
RANDVGNYISRCMVCEAPTRTIAVHSQSNIVPDCPVGWRELWQGYSFLMHTAGADATGQS
LISPGSCMREFRARPFIECNGLGRCNYFSTSVSYWLSVIDDYRMFDKPEQQTLKADLVSK
VSRCAVCMRDWPVPHKSTARAPTTQGDLNSVPNAAIRRPYRPNPRRPYYRRGIRGRRRQ
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggcgcgtgcgcgattcctcgcgctccacctcgtgcccgccacacttttg
cttctgctaaggaatcctacccctacatcagcggtagtgtgtaaccaaacagtatgcgac
tgtgccggcatcaaaggggacgtaggatctgttggaccacccggtgtgcctggtcttcaa
ggtgattacggtgaagatggacctatcggccgcccagggcgacccggtgaggcaggggac
atcggtgacagaggcgatttaggagacaaaggaacacagggcattcggggaccttatgga
cccagaggggacacaggaccacagggaccctatggacctcaaggagtcccgggtttagag
ggttttgatggctgtagcggtatcgatggtattatgggacctcctggaccaatgggtgat
gtcggagaaaggggttcacctggacgtggaggagaaaaaggtgatcaaggtgctgctggt
gatggcggtgtaaactcgcgtggtgcgaaaggtgattcaggtgaactaggacgccaagga
gtgcccggacctccaggagtaatgggttttagaggagatagtggaccgcaaggaccagtt
ggtgatgagggactccaaggtattcgcggagaaccaggagatagaggaaaagagggagac
gacacaataggaccaccgggagaaaaaggtgatcaagggcccgttggtgagccgggcaga
ccagcgtctattattgtgaccagcgaagttcgacagaatattacaattataacaaagggt
aacaaaggccaaaaaggacttaagggacagcgaggagtgaagggacttaaagggatgatt
ggttccattggtccacgaggaactgatggcttgcctggaattcaaggatacaaaggtgac
caaggtcatgatgggcctagaggaaaggttggtcatcgcgggcgagacggtaaccctggc
cctaagggagacaagggtgcaccaggatttgctggtccagatggtgcagacggttataga
ggagagagaggtgaagatggaatgcctggtaatcctggactacaagggtatgctggtgaa
ccgggaatttatgacgataaattggatgtaccacccgtacccggaccaatgggacctcaa
ggtcctgaaggttttgtgggtcctatcggtgcacccggctatcctggtcggcgtggttta
cctggtgttgtgggtccacccggtttaccaggaatcaaaggaactcaaggaagacaaggt
atacccggcacgtcaactaaaggagaacctggtaatgacggtttcaaagggtttcctgga
tatagaggaccctcaggttttgaaggaccatctggcgtcgtaggacctagagggtttaag
ggatctaaggttattgggcctgttggggaagaaggctcacctggcttagacggaatacct
ggtcaaagaggagatcggggtgagtcgggtgacatgggaccttctggttatccggggaca
ggtgtacatggagttggtcctccaggagaagaaggccctccaggatttccaggtcaatct
ggagacccaggctcacccggacgtccaggatttttaggaccaaaaggagaacgtggtgat
gattgtccgtattgtaaatcaggatcagatggtccgaaaggacaacgaggagactatggt
ttcaatggacagaaaggttacccaggcttagaagggattccgggagctcgaggcatcaaa
ggttttggaggaatacctggactgaagggaccaaaaggtccaaaaggaaataagggaatt
gctggtggagcaggaccacaaggatccaaagggccaaaaggaagagtaattttcgacccg
ccactagcacaaattaaagcggaagtcggaccacggggtgacagagggttcatgggttac
cctggtatgccgggagatgcaggatggccaggtcgcgctggagaaataggttttatgggt
atcaaaggtcaaatgggtgatgatggcttccccggcagaccaggaagaaatggaactagg
ggaagagacggtctgccgggaaggccaggccgaccagccacagtacctattcatttcctg
gttggacaaaaaggagaacctggattgaagggtttatctggcgagcctggtgaagacggt
cctcctggtgaacccggtgaatctcttgcctatggaattaacactaaaggtcccaaaggg
taccctggactttctggacaaaaaggattgcctggattaaagggagaaaggggtgaatta
ggcttcgatggcttgccgggtttagccggtgatcaaggtctacccggtagatcccagcga
ggagaaaaaggttttaagggatttataggaattaagggaagtattgggccatacggtata
cctggagcaagaggacaacaaggattaaaaggattccctggtaaccctgggaaaaaaggg
gcgcgtggtgatgctgggcccgctatactggttggagaaaaaggcttcgatggcatacct
ggcgttcgaggtgacgatggcgatgaaggttactctggagttccaggaagaactggctct
atgggaccaaaaggaattcaaggaccaaccggagacttaggtccagacggaccccaagga
ccacagggaagaaaaggtatgtctggaatagaaattcgaggtgcaccaggtatgtctggt
cggccagggagaccaggacgaataggtattgttggcgaaccgggattacaaggatctaat
ggaattcctggagacatgggccctaaaggaatgaagggaaacactgggtatatgggattt
attggcatgcgaggagaaaacggaccacctggtcctgacggatttccgggtttggcagga
atagtgggcaataaaggtgatcaaggagagcgaggagatacgggtgctaatggattcgac
ggggaacctggttcaataggtcccataggaagtcccggacagaaaggagatcagggtgat
ataggtcctgatggtttaccggggactgatggcaggcctggtttcaagggaggtagagga
gatgttggttttccaggattacctggggctagaggtgaaaactctctaagaggtatgaaa
ggcgatggaggtcagccgggtttgaatggcattcccggacgccccggtttgaaaggtttt
aaaggtatcgtcggtgacattggatctcctggcgtgattgtaacaggagaacctggtata
aaaggtgaaaaaggaaatgacggatatccaggaagaaatggggctgttggaagaaaagga
gatcagggtgatatcggtcttataggagaacgcggtgaagatggtggtaaaggtttccct
ggcagaccaggtcgcccaggaaggcatggatccgttggattaaaaggacaacagggtgaa
tttggactcactggaaactcaggacaaaaaggtgacgaaggcatggttggtagaccgggt
agaatcggttcccctggacttcctggtgaagtaggtaatgaaggtccacctggagtccaa
ggttttacaggagctaagggagtccaaggtgacatgggtctaaccacttatgtggctccc
actaagggtgacattggtgatattggtatggaaggattacctggtgaaccaggagataca
ggtgacattggatacgtgggttacgttggtagaaaaggagatcgtggtgatgtaggatat
caaggacaagttggtgatactggtataccaggctacaggggttcaacaggtgaccaagga
cctccaggactacctggcattaatgcagagaatgctccaaggggtgaacaaggaaaacct
ggatttgatggtctacctggatggcctggacctaggggacaaaagggtaagccaggtgaa
tatggtataaacggtcctgatggattacctggcccccctggtctctcattccaaggaccg
aaaggaatgactggaatggatggtgctccaggtcaacaaggtatgcctgggagacccgga
agggaaggattcgaaggtagtcccggcatgcgtggattccagggtgacactggcgaaatt
ggagattcttacagccctaaaggtgaaagaggtgaccaaggtcaaccaggcttctatgga
gctattggacaaaaaggggagcttggcgacaatggtatagacggacgacgaggacgagag
ggattggcaggtgtcaaagggttcagaggagatgagggagaagaagggttttacggacaa
gctggacttaaaggtattaagggtgatgctggcgatacagttgacatatttgatattaaa
cctggaccgcttggcgacattggaccaaatggattcaacggacagcccgggcaagacgga
aaacctggtgcttttggccgcaatggtgtgccaggaagcaaaggagagagaggcgatatc
ggtttcccaggacgagcaggacctcagggacttatgggacgagaggggctgaagggaatc
aaaggcttacaaggataccaaggaaaccgtggtattactggcaatgctggcattccagct
gtacaacctatgccaaaatctcgaggcttttactttacagtacattcacaaaaaagaatg
attccacaatgtccagcaggaacttcacccctttggagcggatactcccttatacatatc
cttgctaacgggaaagcacatggacaagacttgggtgcttcaggaagctgtttacgcaaa
ttttcgacaatgccgtatatgttctgtaacatcaatgatgtttgcaacttggcccaacgt
gaagactttagtttttggctatcgacgcctgaacctatgcctatgtccatgactcccata
cgcgcaaatgatgttggcaactatatttctaggtgtatggtatgtgaggcaccaacccga
acaatagctgtgcatagccaaagtaacatagtccccgactgtcctgttgggtggcgagaa
ttatggcagggttacagtttcctaatgcacactgctggagcggatgccacaggtcaaagt
cttatatcccctggatcctgcatgagggagttccgagcacgtccattcattgaatgtaat
ggacttggacgctgcaactacttttcaacttccgtttcctactggctctcagttatagat
gattacagaatgtttgacaaacctgaacagcaaaccttgaaagccgaccttgtctccaaa
gtgagccgctgtgctgtttgcatgagagattggcctgtgccacataagagcacggctcgc
gcacctacaactcaaggagacctgaactccgtgcctaacgcggctatacgaaggccatat
cgtccgaacccgcgtcgaccctactaccgtcgtggcatacgtggaaggcgtcggcaatga
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