Trichoplusia ni (cabbage looper): 113502051
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Entry
113502051 CDS
T05757
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tnl01009
]
113502051
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113502051
04131 Membrane trafficking [BR:
tnl04131
]
113502051
03036 Chromosome and associated proteins [BR:
tnl03036
]
113502051
Enzymes [BR:
tnl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113502051
Protein phosphatases and associated proteins [BR:
tnl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113502051
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
113502051
Membrane trafficking [BR:
tnl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
113502051
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
113502051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
113502051
NCBI-ProteinID:
XP_026739229
UniProt:
A0A7E5WEV6
LinkDB
All DBs
Position
16:complement(6773783..6788473)
Genome browser
AA seq
1128 aa
AA seq
DB search
MSTPPPPPPRRSSGESKKVTPPASSIVTRNGARKAKIQTRAMSAGAKPSALVVAAKRKAQ
QKKKHGIETELRDHYQIAMDSKTKVKGATGLVTEPRMAEHRCLWDDKYPECPERLTSIIE
RCHELNLIEQCKQFPPRAATKEELCVLHAPSVYDMMEKTHQNNDVEYLEQVSAKYDAIYI
HPTTHELALLAAGSTIDLVSRVVSGSIQNGLALVRPPGHHAMRAEPCGYCFYNNVALAAR
HATDTLGLTRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHGAFWPNLRQSNFHYVG
AGRGKGYNFNVPLNKTGMKDGDYLAIWHQLLLPMAFEYQPELIIISAGYDAAYGCPEGEM
ELTPACYAHLTSLLMSVSARVCVALEGGYCLQALADAAALTLRALLGHAAPSLEDVSEPS
DEIRDTILNCIYAQKPYWNCYNYQPTYSLSGPPNVSDVTRGRHVVSVKWEGDETRPDTFL
TRDCYPLQDDKTKAEIARRLNHLRIVTDLTLPQHPVGYIYDQAMLKHKNVCEPGHVECPE
RILRIHERHRDFGLLDRLHQLAPRTATDEEILTVHTEKHLNRLKELSTTKLRNLNKQKEE
FDSVYFHPDSLESAAVAVGCVLQMVDSVLSNECGSGVCVVRPPGHHADRWSPSGFCLLNA
AAAGASHALRARGLARVLLLDWDVHHGNGTQAITYHDNRILYMSIHRYDHGSFFPHSKDA
DHTAVGEGKGEGFNVNIPWNKRGMGDAEYLSAFTQVILPIAYEYNPELVIVSAGFDACVG
DPLGGCKVTPECFGRMTQLLRGLAGGRVILCLEGGYNITSISYSMTMCTKALLGDPIHHH
YDPKTPALWSAIDTIHDVINTHKQYWKSLKFQVALPTDYELETPLPSRGLIVDQTEFDIS
VSSIDLNDSTKSVSKSQLETSLETDLAKLTIGKKCSDGIHCGTDDEDETKTPKPPKPSEE
NTQATSSTPATKAGASSHKTCDKGGSSTPKATLVDYLAENMRAIADGDMFAVIPLQWCPH
LDSLFAIPSDVKFEQGVKCIDCEHTEENWVCLHCYITACARSINGHMQAHHVATGHALVL
SLVDLSVWCNVCDAYVDNALLYDAKNNAHKCKFGEDMPWCYKTDIHMQ
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccccaccgccaccgccgcctcgtcgatcgtctggagagagtaaaaaggtgaca
ccacctgcatcaagtatagtgaccagaaatggtgctcgcaaggccaagatacagacccgc
gcgatgtccgccggggctaagccttcagctctagtagttgctgccaaacgcaaagcacag
cagaagaagaaacacggtatcgaaactgaattgagggatcattatcaaattgcgatggat
tccaagacaaaagtgaagggtgcgaccggtctggtgacggagccgcgcatggcggagcac
cgctgtctgtgggacgacaaatacccggagtgtcccgagagactcaccagcattatagaa
aggtgccatgaattaaacttaatagagcaatgcaaacagttcccaccacgagcggcgact
aaggaggagttatgtgtcttgcacgcgccctctgtgtacgacatgatggagaagacgcat
cagaacaatgatgttgagtatctggagcaggtctccgctaaatatgatgcgatttatata
cacccgactacccacgagctagccctgctagctgcgggctctacaatagacctagtttct
cgcgtagtgtcaggcagcatccagaatggcctggcgctggtgcgtccgcccggccaccac
gccatgcgcgccgagccctgcgggtactgcttctacaacaacgtggcgctggccgccagg
catgccaccgatacactcggcctgaccaggatactgattgtggattgggatgtgcatcac
ggacaagcgacacagcaaatgttttacaacgatcctagggtagtatacttctctatccac
cgctatgagcacggcgccttctggccgaacctccgccagtccaacttccactacgtgggc
gcgggccgggggaaggggtacaacttcaacgtacccctcaacaagaccggcatgaaagat
ggcgactatctcgctatatggcaccagctgttactgcccatggcttttgaatatcaaccg
gagctcatcataatatcagccggttacgacgctgcctacggctgtcctgagggcgagatg
gagctaacgcccgcttgctacgctcacctgaccagcctgctgatgtcggtgagcgcgcgc
gtgtgcgtggcgctggagggcggctactgcctgcaggcgctggccgacgccgccgcgctc
acgctgcgcgcgctgctgggacacgccgccccgagcctggaggacgtcagcgagcccagc
gatgagataagagacacgatcctaaactgcatatacgctcagaagccgtactggaactgc
tacaactaccagccgacgtactcgctgtcggggcctcccaacgtgagtgacgtcacgcgg
ggcaggcacgtggtctccgtgaagtgggagggagatgaaaccaggcctgacaccttcctc
accagggactgttacccgctgcaagacgataagactaaagctgagatagctcgccggctg
aaccatttgaggatagtgactgatttaacgctacctcaacacccagtgggctacatctac
gaccaagcaatgttgaaacataagaatgtctgtgaacccggtcacgtggagtgtccggag
cgtatcctacgcattcacgagcgccaccgagacttcggcctgctggacaggctgcaccag
ctcgcacccaggactgccactgatgaggagatactcactgtacacactgagaaacattta
aacaggttaaaagagctgtcaacaacgaaactaagaaacctcaacaaacagaaggaagag
ttcgactcggtgtacttccaccctgattctctagagagcgctgcggtagctgtggggtgt
gtcttacagatggtagactcagtgttatccaacgagtgcgggtctggcgtgtgcgtggtc
cggccgccgggccaccacgccgacaggtggtcgccgagcgggttctgcctgctgaacgcg
gcggcggcgggcgccagccacgcgctgcgggcgcgcggcctggcgcgcgtgctgctgctg
gactgggacgtgcatcacggcaacggcacgcaggccatcacctaccacgacaacaggatc
ctttacatgtctatacaccgctacgaccacggctcgttcttcccgcactcgaaggacgcg
gaccacacggccgtcggcgaagggaagggggaggggttcaatgttaacataccttggaat
aagcgtggcatgggcgacgcggagtacctgtcggccttcacgcaggtgatcctgccgatt
gcctacgagtacaacccggagctcgtcatcgtgtccgccgggttcgacgcctgcgtcggg
gacccgctcggaggttgcaaagtgacgccagaatgtttcggtagaatgacacagttactc
cgcgggctggcgggcggccgcgtcatcctgtgcctggaggggggctacaacatcaccagc
atctcctactccatgaccatgtgcacgaaggctctgctcggtgaccccatccaccaccac
tacgaccccaaaacccccgcactctggtccgccatagacacaatccatgacgtcatcaac
acacacaaacaatactggaaatcactcaaattccaagtcgcactaccaactgattacgaa
ctagaaactcccttaccatccagaggactcattgtagaccaaaccgaattcgatatatca
gtcagtagcatcgacctcaacgactcgacgaaatcagtatcaaagagccagttggaaaca
tcgttagaaactgatctcgctaagttgacgataggaaagaaatgttccgacgggattcac
tgcggtacagatgatgaggacgaaacaaaaacacctaaacctccaaaaccaagtgaagaa
aatactcaagcaacaagtagtacgccagctacgaaggcaggagcctcaagtcataaaacg
tgtgacaaaggaggttccagtacgccgaaagcgacattagtcgattacttggcggagaac
atgcgagcgatagccgacggcgatatgttcgccgtgattcctctgcagtggtgtccgcat
ttagactcgttgtttgcgataccgagtgacgtgaagttcgagcaaggtgttaaatgtatc
gactgtgaacatactgaagagaattgggtgtgcctgcattgttatataacggcatgtgcc
cgcagcattaacggccacatgcaagctcaccacgtagcgacaggccacgcgctagtgctg
tcgttagtcgatttgtcagtgtggtgcaacgtctgtgacgcatacgttgacaacgcgcta
ctctacgacgccaagaacaacgcgcataaatgcaagttcggggaagacatgccgtggtgc
tataagactgatatacatatgcaataa
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