Trichoplusia ni (cabbage looper): 113502214
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Entry
113502214 CDS
T05757
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113502214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113502214
03041 Spliceosome [BR:
tnl03041
]
113502214
03009 Ribosome biogenesis [BR:
tnl03009
]
113502214
03016 Transfer RNA biogenesis [BR:
tnl03016
]
113502214
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113502214
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113502214
Spliceosome [BR:
tnl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113502214
Complex C
U4/U6.U5 tri-SnRNP related factors
113502214
Ribosome biogenesis [BR:
tnl03009
]
Eukaryotic type
Pre-60S particles
Helicases
113502214
Transfer RNA biogenesis [BR:
tnl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113502214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
PAP_NTPase
Cep57_CLD_2
Motif
Other DBs
NCBI-GeneID:
113502214
NCBI-ProteinID:
XP_026739472
UniProt:
A0A7E5WGD4
LinkDB
All DBs
Position
16:complement(8960926..8969074)
Genome browser
AA seq
1030 aa
AA seq
DB search
MADVNSLFDCFDDTTPKEAAIQLPVCKKEDEKSEKSIDADGPNLKRLHEDVEIIEQSTKK
VKPAEEDSDITSDINLELLNARIVIHTLETHEGCTHEVAIPPNHEYTPLMPLTSEPAKQY
SFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSN
QKYREFSEEFLDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPL
QHYIFPAGGEGIHLVVDEKGIFKEDNFNTAMAVLSNAGDAAKGDQRGRRGGPRGANTTNI
FNIVKMIMERNFAPVIIFSFSKKDCEAYAMQMAKLDFNTIEEKKLVDEVFSNAMDVLSEE
DRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPAR
TVVFTNCQKFDGKDFRFISSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPAIVKGMVQG
KADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKAKQKEYDR
LSIEDEHSIASYCSIRSQLDLLGAQFRSFITKPEYLKPFLQPGRLVKVKTEKHEFDWGII
VNFRHKTGKGKKHEENPLTAETVIIVDILLHVKKASGEDTDTKQPCPPGEAGDVEVVPVL
HTLIYQISSLRVYYPKDLRPADNRKSVLKTIGEVKKRFPDGPPLLNPIKDMKINESVFIE
CVDRIKRLEERLYSHDLHNDKNRGALTAAYETKQELQQELNMLKAELKHAKSILQMDELK
KRKRVLRRLGYCTAADVIEMKGRIACELSSADELLLTELIFNGVFNGLTSEQSAALISCF
VCDENSSQSSATGEELRGVLRQLQEYARRIAKVSLDAKMEIDEDEYVGKFKCTLMDVVLA
WSKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLLKR
DIVFAASLYM
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatagtttgtttgattgttttgacgacacgactcctaaagaagctgca
attcaattgccggtttgtaaaaaggaagacgaaaagtcagaaaagagtatagatgcagat
ggacctaatttaaagcgattacacgaggatgtggaaattatagagcagtctaccaagaaa
gttaaacctgctgaagaggattcagacataactagtgatataaatcttgaacttctgaat
gctagaattgtgattcatacactagagactcatgaaggctgcacacatgaggtagcaata
cctcctaaccatgagtatacacctctaatgcctctcacatcggagcctgcaaagcaatat
agcttcatactagatccctttcaaaaggaggctatactgtgtatagataatttacagtct
gtgctggtatcggcccacacatctgccggaaaaactgttgtggctgagtacgctatagca
ctatcattaaagaataagcagcgtgtaatatacacaactccaataaaagccctctccaat
cagaagtaccgggagttctccgaggagtttctcgatgtgggccttattactggtgatgtc
accatcaatccttcagcttcttgtcttattatgactacagagattcttaggaatatgttg
tatagaggatcagaaatcatgagagaagtgggatgggttgtgtttgatgaaattcactac
atgagagacaaagagagaggtgtagtctgggaagaaactctgatcctattgcctgacaac
gttcactacgtgttcctctcggctacgatccccaacgcccgccagttcgccgagtgggtg
tgccgcttgcactcccagccttgccacgtcgtgtacacagagtacagacctactccacta
cagcattatatattccccgccgggggtgagggaatacatcttgtggtggatgagaagggt
atattcaaagaagacaacttcaacactgccatggcagtactaagcaacgcaggtgacgcg
gccaagggcgaccagcgcggcagacgcggcggcccgcgcggcgccaacactaccaacata
ttcaacattgttaaaatgatcatggagagaaactttgcgcctgttatcatattcagtttc
agtaagaaggactgcgaagcatacgcaatgcagatggcgaaactggactttaatacgatt
gaagaaaagaaactagtggacgaagtattcagcaacgcgatggacgtgttatctgaagaa
gatcgtaagctgcctcaagtggagaacgtgataccgctcttgagacggggcatcggcatt
catcatggcggactacttcctatactcaaagaaacaatcgagatcttattcggattggga
cttataaaggcgttgtttgcaacggagaccttcgcgatgggtctcaacatgccggccaga
accgtcgtgttcaccaactgccagaaattcgacggcaaagacttcagatttatatcatct
ggtgaatacattcagatgtccggtcgcgccgggcggcgaggtcttgacgataagggtatc
gtgatactcatgattgatgagaaggtcacccctgcgattgttaaaggcatggtgcagggc
aaagctgatcctataaactcagccttccatttgacttataatatggtcctcaatttacta
agagttgaagaaatcaatccagaatacatgttggaaagaagtttcttccagtttcagaat
caggcggcgatacctgatttaatagacaaggtgaaagcaaagcaaaaggagtacgaccgc
ttgagtattgaagacgaacactccatagcctcgtattgcagcatcagatcacaacttgat
ctgttaggggcgcagttcaggtcgtttatcaccaagccggagtatctcaagcctttcctg
caacccggacgacttgttaaggtaaaaacggaaaaacacgaatttgattggggcataata
gtgaacttcagacacaagactggtaaaggcaagaagcacgaagagaacccgttgactgct
gagactgtgatcattgtggatatactgctgcacgttaagaaggccagcggtgaagatact
gataccaaacagccgtgtccaccgggcgaggcaggcgatgtggaagtagtcccagtgctt
cacactctcatatatcagataagctcgttacgggtctactaccctaaagacctaaggccg
gcagacaaccgcaaatctgtgctcaagactattggagaggtgaagaaacgcttccctgat
gggccaccactactgaatcctattaaagacatgaagatcaatgaatctgtattcattgag
tgtgttgacagaattaaacgtctagaggaaagattatactctcacgatttacacaatgac
aagaaccgcggcgcgctaacagccgcgtacgaaactaagcaagaattgcagcaagagttg
aacatgttgaaggctgaactgaagcatgccaagagtattctgcaaatggacgagctgaag
aagaggaagcgagtactgaggcgacttggttattgtactgctgctgacgtcattgaaatg
aagggccgtatagcttgcgagctcagtagtgcagacgagctcttactaacagagttgatc
ttcaacggcgtgttcaacggcctgacgtcagaacagagtgcggcgcttattagctgcttc
gtgtgtgacgagaactcctcgcagtcctccgccacgggggaggaactacgcggagtgctg
aggcagctgcaggaatacgctcgcagaatagctaaagtatctcttgatgccaagatggaa
atagacgaagacgagtatgtgggcaagttcaagtgcacgctcatggacgtcgtcctggcc
tggtctaagggagcctccttcttgcagatatgcaagatgactgatgtatttgaaggctcc
ataatcagatgtatgcgtcgacttgaagaagtgctgcgtcagttatgccaagcagccaag
aacatcgggaacacagacctggaaaacaaattcagtgaagcaatcaaactgctgaagaga
gacatcgtattcgcggccagtctctacatgtaa
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