Trichoplusia ni (cabbage looper): 113502227
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Entry
113502227 CDS
T05757
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113502227
03036 Chromosome and associated proteins [BR:
tnl03036
]
113502227
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113502227
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113502227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
HHH_3
SH2
Spt6_S1
HHH_9
S1_RRP5
Tex_N
Collagen
OB_RRP5_4th
Rrp15p
Motif
Other DBs
NCBI-GeneID:
113502227
NCBI-ProteinID:
XP_026739518
UniProt:
A0A7E5WFP0
LinkDB
All DBs
Position
16:394360..414126
Genome browser
AA seq
1745 aa
AA seq
DB search
MADFLESEAEESEVDSEDEQPAERKKPKRKAAVQSDDEDEDEEDDEERLREELKDLIDDA
PIEESGSDGEDSDASAGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLE
DDDSDNEGNDDPELEREVIAEKLFVGGSDEEDENRSESAAPRGEAEYDDDNEDLESDADD
FIVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEDEEDLDE
YLEDEEEEGEKRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQTR
EVPITPVEEGSTELEDEAEWIYKQAFLKPPVSKPDPQEARERSRRGNSTITKIRQALDFM
RNQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLKLFENMREFQLD
KVMENPDAPIPENMRLIKDEDIERLKNVQTPEELRDVHTHFLLYYSSDLPEMQKLQKTKE
KKRDLEERKRMAREEADKNGEDPEEAAAAVEAAEPDDEPVTDVKYAVRSGPYELCRKAGL
EPLVKKFGLTPEQFAENVRDNYQRHEVEQQPIPPLEAAAEYTGAVGSAAEVVRRAVYMCG
VQLAREPLLRATLRDALRDRATLCVRPTPRGLKEIDENHACFGLKYLKKKPVRDLTGDQF
LKLTMAQEDKLLEISISEQIEGNTSPSYLEELKQLYQKDEFAATVEAWNELRADAVTIAL
TKIVMPELRRELQAVLLQESKEYVLKCCRRRLYDWLKVAPYESRVSDDDDEEWDASNGLR
VLSIAYVPDRAHSAFACVVAGGGEVADHLRLPHLLHRRNAWDALERQNKDADMTALRRFI
LRKKPHVIVIGGESREALNVKADVSDCVQQLVEDEQFPRIPIEIADNHISKIYSNSIRGR
NDFREYPDILRQAICQARLLQDPLMEISQLCGPDEEIMCLRYHTLQDQITKEDLLEGIEL
EFVNRVNEVGVDVNEAVLTGRGTELLQFVCGLGPRKAQALIKLFKQTNQKLENRTQLVTV
CHMGPKVFINCSGFIKIDTSSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDED
ANPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIREELNSRYKDLRVAYR
SPTAEEMFDVLTKETPETFYVGKMVLASVIGITHRKPQREMLDQANPVRNDETGLWECPF
CHKNDFPELSEVWNHFDAGACPGQATGVRIRLDNGLSGYIHIKNLSDRHVADPTERVRIG
QTVHCRILKIDVERFSVDCSSKSSDLLDKNKEWRPPKDPYYDQESEDKDLRKEKEAKQTK
ERMQYVKRVIVHPAFHNISFAEAEKLMDKMAQGEVIVRPSSKGSDHLTVTWKVADGIYQH
IDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARYVTPMAGHARDLIAYKYYKPLGGMRD
KAEELLKEEKARNPNKIHYVISAAKNYPGRFLLSYLPRARCTHEYVSVTPDGYKYRQRTF
DSLPGLLRWFKEHFREPPPATAARTPAPRTPLPTSAYHTPANHTPAFHTPAHTPGPAYIN
TPYTPSAQTPYMTPFATTPRQPDFLAPAPRRAPTAAPHLAHVSHASHASHAQHAPPGYTE
PADWQKAAEDWIRRNNRDPSGTPRDSRSLATPREGRDGRDGREGRDGRESRDGRDGRESR
DGRDGRDSRDGRDGRDSRASRTPRTPHAHSSGRSSRAHSLRSTPHTNTSPRSMSLGDATP
LYDEN
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttctggagtcagaagctgaggaaagcgaggtcgattctgaagacgaacag
ccagcagagcgcaagaaaccaaaacgcaaagcagccgtgcaaagtgacgatgaggatgaa
gacgaagaagatgatgaggaaagactccgtgaagaacttaaagatttgatagatgatgca
cctatagaggagtctggtagtgatggggaagattcagatgctagtgctggaccaaagaaa
agaaagaaaagcgatgatgagctggatgatcgactggaggatgaggattatgacctcatt
gaagaaaatcttggtgttaaagttgctaggaataagttcaaacggttgaggcggttagaa
gatgatgacagtgataatgaagggaatgatgatccagagctggagagagaggtcatcgct
gagaaactctttgttggaggctctgatgaggaggatgagaatcgttcagagtcggcggct
ccccgcggcgaggcggagtatgatgatgacaatgaagacctagagtcagacgcagatgac
ttcatcgtagatgatgacggcagacccatagctgagcgaaagaagaaacgaaaacctata
tttactgatgcgtccctacaagaaggtcaagacatctttggtgtggactttgactatgat
gagttcgagaagtatggtgaggaggactatgaggatgaggatgaagaagacttggatgag
tatctggaagacgaagaagaagaaggtgaaaaacgtagaacaaagaaaggcaaagccaaa
aggccaagtaagaaatctatatttgagatttatgagcccagcgagttgaagagaagtcac
ttcactgatttggataatgagatacgaaaaacagacgtccctgagcgcatgcaaactcgc
gaagttccaatcacgccagtagaagaaggtagcacagagttagaagatgaagcggaatgg
atttacaagcaggcgttcctgaagccgcccgtgtccaagcccgacccgcaagaggccagg
gagaggtcgcgcagaggtaacagcacaataacgaagattcgtcaagcattggacttcatg
cgcaaccagactttagaagtacccttcatagcgttctatcgtaaggagtatgtgcagcca
gaactcagcatcaatgatctgtggaaagtgtataaatatgatgctaaatggtgtcaacta
aaacaacgcaaggagaacctcctgaagttatttgagaacatgagagagttccagttggac
aaggtcatggagaaccccgacgctcctatccctgaaaatatgagactgatcaaagatgaa
gatattgaaaggttgaagaatgtccagactccggaagaacttcgcgacgtgcacacacac
ttcctcctttactactcttcagatttgccagaaatgcagaagttgcagaaaactaaggag
aagaagagagatttggaggagaggaaacgcatggcacgtgaagaggctgacaaaaacggc
gaggacccggaagaggcggcggccgcggtggaggccgccgagcccgacgacgagccggtc
accgacgtcaagtatgccgtgcggtccgggccctacgagctgtgcaggaaggctggcctc
gaaccactggtgaagaagtttggtctaacaccggaacagttcgctgagaatgtgcgcgac
aattaccagcggcatgaggttgaacaacagcctataccgccgctagaggccgctgctgaa
tatacgggcgcggtgggttccgcggcggaggtggtccgtcgcgcggtgtacatgtgcggc
gtgcagctggcgcgcgagccgctgctgcgcgccacgctgcgggacgcgctccgggaccgc
gccacgctctgcgtgcgccccacgccgcgcggactcaaggagatcgacgagaaccacgcc
tgcttcggtttaaaatacttaaaaaagaagccagtacgagacctgacaggcgaccagttc
ctaaaattgacgatggcacaagaggacaagcttctagagatcagtatcagcgaacaaatt
gaaggcaacaccagccctagttacttggaggaactgaaacaactctatcaaaaggacgag
ttcgcggcgacagtagaagcatggaacgaattgcgcgctgacgctgtgacgatcgcgctc
accaagatagtgatgcccgagctcaggcgggagctacaagctgtactgctgcaggaatcc
aaggaatatgtgctcaaatgttgtcgacggcggctctatgactggttgaaggtggcgccg
tatgagtccagagtgtcggacgatgatgatgaagagtgggatgcatctaatggcctgcgc
gtgctatccatagcgtacgtgccggaccgcgcgcacagcgcgttcgcgtgcgtggtggcg
ggcggcggcgaggtggccgaccatctgcgactgccgcatctgctgcaccgccgcaacgcc
tgggacgcgctcgagcggcagaacaaggacgccgacatgaccgcgctgcgacggtttatt
ttacgcaagaagcctcacgtgatagtgatcggtggcgagtctcgtgaggcgctgaacgtg
aaggccgacgtgtcggactgcgtgcaacagctggtggaggacgagcagttcccaaggata
ccgatagagatcgctgacaaccatatcagcaagatctatagtaatagtatacgtggacgg
aatgattttagagaatatcctgatatccttcgtcaagcgatttgccaagcacggttgttg
caagatccgttaatggaaatctcgcaactatgcggtccagacgaggaaattatgtgccta
agataccataccctacaagatcaaataactaaagaagatttattagaaggtatagaacta
gaatttgttaatcgtgtgaacgaagtaggtgtagacgtcaatgaagcagttctaaccggt
cgggggactgaactgctacagttcgtctgcggcctgggacctaggaaagcacaagcccta
ataaaactcttcaaacaaacaaaccagaaactagaaaacagaacacaactcgtgactgtt
tgtcatatgggacccaaagtcttcatcaactgttcaggtttcataaaaatagatactagt
agtctcggtgacagtactgaggcgtacatagaagtgctcgacggctcccgagtgcatccg
gaaacgtacgagtgggcacgaaagatggccgtcgacgcgctggagtacgaggacgaggac
gccaaccccgccggagcactcgaagaaatattagaagcccccgaaagactgaaagacttg
gacttagatgcgttcgccgaagaattggagcggcaaggcttcggcaacaaaagtatcact
ctgtacgatattagagaagaattgaactctaggtataaggaccttagggttgcttatcgc
tcgccgacagctgaagaaatgttcgatgttctaacaaaagagacgccagagactttctac
gtcggcaagatggtgttggcgtcagttattggtattactcataggaaaccccaaagggaa
atgttggaccaagctaaccccgtaagaaatgatgagactggactttgggagtgccccttc
tgtcataaaaatgacttccctgagttatccgaggtatggaaccacttcgacgccggcgcg
tgtcctggccaggcgacgggcgtccgaatccgtctcgacaacggcctctcaggctacatc
cacataaagaatctttcggacagacacgtagcggatcctacagaacgcgtacgaatcgga
cagactgtacattgtaggatactcaagatagatgtcgagaggttctcagtagactgctcg
tccaaatcctcagatttgttggataagaataaagagtggagacctcctaaagatccatat
tacgatcaagaatcagaagacaaggatctccgtaaagagaaagaggcgaaacagacgaag
gaacgaatgcagtatgtgaagcgagtgatcgtgcaccccgctttccataacatatcgttc
gcggaggccgagaaactcatggataagatggcgcaaggggaggtcatagtccggcctagt
agcaagggttccgatcacctcacagtgacgtggaaagtagcagacggcatttatcaacac
atcgacgtgcgggaagagggaaaagaaaacgcattctcgttaggtcgaagtttatggatt
caaggctccgagtttgaagatttagatgaaattatagctaggtatgtgactccaatggcg
gggcacgcgcgtgatctaatcgcttacaagtattacaagccgctcgggggcatgcgagac
aaggctgaggagttgctgaaggaggagaaagcgcgcaaccccaacaagatccattacgtg
atctcagccgccaagaactaccccgggcgcttcctgctgtcgtacctgccgcgagcgcgc
tgcacgcacgagtacgtgtccgtgacgccggacgggtacaagtaccgacagcgcacgttc
gactccctgcccggactgctgcgctggttcaaggagcacttccgtgagccgccgcccgcc
acagcggcccgcacgcctgccccgcgcacgccactgcccacgtccgcttaccacacaccg
gctaaccacacgcctgccttccacacgcccgcccacacgcctggtccagcctacatcaac
acgccctacacgccctccgcgcagactccctacatgacgcccttcgccacgaccccccgc
cagcccgacttcctggcgcccgccccgcgccgcgcccccaccgccgcgccgcacctggcg
cacgtgtcgcacgcgtcgcacgcctcgcacgcgcagcacgctccccccggctacaccgag
cccgccgactggcagaaggccgccgaggactggatccgccgcaacaaccgcgacccctcc
ggcacgccgcgagactcgcgctccctggcgactccgcgggagggccgcgacggccgggac
gggcgagagggacgagacggccgggagagtcgcgacgggcgagacggccgcgagagccga
gacgggcgcgacgggcgggacagccgtgacgggcgtgacgggcgcgactcgcgcgcgtcc
cgcacgccgcgcacgccgcacgcgcactcgtccgggcgctcgtcgcgcgcgcactcgctg
cgctccacgccgcacaccaacacgtcgccgcgctccatgtcgctgggcgacgccacgccg
ctctacgacgagaactag
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