Trichoplusia ni (cabbage looper): 113502926
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Entry
113502926 CDS
T05757
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113502926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113502926
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113502926
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
PAM2
Motif
Other DBs
NCBI-GeneID:
113502926
NCBI-ProteinID:
XP_026740519
UniProt:
A0A7E5WIJ7
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Position
1:complement(1367628..1384148)
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AA seq
771 aa
AA seq
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MNSVLNPEAPEFYPHLTSVTQGGYVSVNKSIKSVNAMPFGHAYDLFKTFTDFNILTCHLS
ENVVLQSNQIVATEVPAVKLKLKDLEYNTEKIIDVNDSIIDRININIDSETGVNEPSNNF
IKGILTKPNISAWNAAPVIAKIQVGSATFIGAKNIPRPQLNFKDPIDNSENLWVPKISDK
PNNIKPLALNILYNDEGEAVGYEHPYKVELDLYNPPAQFIEPDAQPFPFPAPLEETTLTY
VDTEEKLDALVAHLHTVNELAIDLEHHSYRTYQGITCLIQVTTIEGGDFIIDALAIREHV
HKLNLAFTNPKKIKVFHGAENDVIWLQRDFGVYLVGMFDTHQAALVLKLSGLSLKHLLMK
YCHVNADKKYQLADWRMRPLPAELIEYARMDTHYLLYIWRQMKAELLKEGEPHLLLSVFE
NSRQICGATYNKEVVNDSSHMSLFVRSKKSFTSQQMTALKMLYKWRDTQARLLDESTTYL
LPNHMLLALAETLPREVQGVNAICCPMPPFVKQNLLTIHRMILSCREMPNQPQLYQMPSS
IRNMVNAAAIQPMNTYNVHDLAHYVDVSEENAINLDRAAELLEDCNTSEPEIEAFLPQTT
MISYGTIISDLNADAKLFIPPYDRYRKYRSLAQMEEIKEFKDKEAKITAISKGNELIKAE
VLAKLQQAKTQVENEGQNVSETKEMVDVGEVDDALKKTQQRKRKISTVKVENKKSADIVT
ENKKKELLNTNPQHNLKTFAYKNVDYKKFYNNTNKEHNQKQHKMKFKKYKK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgttttaaatccggaggctccagaattctacccccacttgacatcggttaca
cagggtggctatgtatcagttaacaaatcaatcaaatcagtgaatgctatgccatttgga
catgcatatgatctcttcaaaacatttactgacttcaacattttaacatgccatttaagc
gaaaatgtagttctccaatcgaaccaaatagttgcaaccgaagtaccagctgtgaagtta
aaactcaaagatctcgaatacaacacagagaaaattattgatgtgaacgacagtatcata
gacaggatcaatataaacatagacagtgaaacaggtgtcaatgaaccgagcaacaatttc
attaaaggaatcttgacaaagccgaatatttcagcatggaatgccgcaccggtcattgcc
aagatccaggtgggttctgcaacatttatcggtgctaaaaatattccgcgacctcaactc
aacttcaaagacccgatcgacaactctgaaaatttgtgggtgccaaaaatatcagacaaa
ccaaacaacatcaagccgctggctctgaacattctatacaacgacgaaggcgaggcagta
gggtacgaacacccttataaagttgagttggatctttacaacccgcccgctcaatttatc
gaacccgatgcacaaccattcccgttccctgcgcccctggaagagacgaccctcacgtat
gtggacaccgaggagaagctcgacgccctggtcgcgcacctccacaccgtcaacgaacta
gccattgatctggaacaccactcgtacaggacgtatcaaggtattacttgtcttatccaa
gtgaccaccattgaaggaggtgatttcattatagacgcgcttgcaattcgtgagcatgta
cacaaactgaatcttgcatttacgaacccgaaaaagattaaagtattccacggtgccgag
aacgacgtgatatggctgcaacgggacttcggggtctatttagtcggcatgtttgacacg
caccaagctgctctggtgcttaagctatctggactatcactgaagcatcttctcatgaag
tactgccatgttaatgccgacaagaagtaccagttagcggactggcgcatgcgccccctg
ccggcggagttgatagagtacgctcgcatggacacgcattacttgctctacatctggcga
cagatgaaggccgagttgctgaaggagggcgagcctcacctcctgctgtccgtcttcgag
aacagcagacagatctgtggagccacttataacaaggaggtcgtgaacgattccagtcac
atgtcgttattcgtgcgctccaagaaatcgtttacctcgcagcagatgacagctctcaag
atgctttacaaatggcgagacacccaggcgcgcttgctcgatgaaagtaccacatatctt
ctccccaaccacatgctcctggctctcgccgagacgttgccgcgtgaggtgcagggcgtg
aacgcgatctgctgccccatgccgcccttcgtcaagcagaacctgctcactatacacaga
atgatactgtcgtgccgcgagatgccgaaccagccgcaactgtaccagatgccgtcgagc
atcaggaacatggtgaacgctgccgccattcagcccatgaatacgtacaacgttcacgac
ctcgcgcactacgtcgatgtgagtgaagagaatgctatcaacttggaccgcgcagctgaa
ctgttagaggattgtaacacctcggaaccggagatcgaagctttcttaccgcagacgacc
atgatatcgtatgggacaatcatctcggatttgaacgccgatgcgaaactattcattcca
ccttatgatagatacagaaaatatcgttccctagctcagatggaagaaattaaagaattt
aaagataaggaagcgaaaattacggctataagtaaaggcaacgaattgatcaaggctgag
gtccttgcgaaactacaacaagcgaagacacaggtcgaaaacgaaggtcagaatgtcagt
gaaacgaaggaaatggtagatgttggcgaagtagatgacgcactaaagaaaacgcaacaa
cgcaaaaggaaaatatcaaccgtaaaagtagaaaacaaaaaatccgctgacattgtcact
gagaacaagaaaaaagaactactcaacacgaatccacaacacaacctgaaaacgtttgct
tacaaaaacgttgactacaaaaagttttataacaacactaataaagaacacaaccagaaa
caacataaaatgaaatttaaaaaatataaaaagtag
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