Trichoplusia ni (cabbage looper): 113502953
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Entry
113502953 CDS
T05757
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tnl03041
]
113502953
03016 Transfer RNA biogenesis [BR:
tnl03016
]
113502953
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113502953
Spliceosome [BR:
tnl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113502953
Transfer RNA biogenesis [BR:
tnl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113502953
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Cas3-like_C_2
DAO_C
Motif
Other DBs
NCBI-GeneID:
113502953
NCBI-ProteinID:
XP_026740518
UniProt:
A0A7E5WII5
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All DBs
Position
18:complement(6516250..6522552)
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AA seq
729 aa
AA seq
DB search
MTAFEEFGVLPELGKAIDEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDLQEGKTSKGIITISSDCTLSLFDRTEALAVTPDGLRCQSRDQKGWHGCRA
TKGVHTKGAYYYEATVTDEGLCRVGWSSQTSKLDLGTDKDGYGFGGTGKKSNAKNFHDYG
SAYGKNDVIGCMLNLDTQEIIFTKNGENLGVAYNIKNNRSPTETYFPAVVLKNAEMSFNF
GKTPFKYPPPEGYVAMADAPKDCVKTNVVTPDGVSEAAKPANKAPQSIIIEPSRELAEQT
CNQITKLKKYLENPSIRELLVVGGINVKDQISALNSGVDIVVGTPGRLEDLIQGGYLALT
HCRFFVLDEADGLLKAGYGPLIDRLHRQIPKITSDGRRLQMVVCSATLHAMEVKKMAEKL
MHFPTWVDLKGEDSVPDTVHHVVVNVNPQTDRSWETLHKHIQTDGVHSKDNIRSGNTTPE
TLSEAVKILKGEYCVRAIKEHKMDRAIIFCRTKLDCDNLERYLKSYGNEYSCVCLHSDRK
PAERKGNLEKFKDNQVKFLICTDVAARGIDISGLPFTINVTLPDEKSNYVHRIGRVGRAD
RMGLAISLVSTVPEKVWYHGEWCSSRGRNCWNTTLIDDRPKGCCTWYNEPQYLADIEDHL
NITIQQVEADIKVPCNEFDGKVVYGQKRTQVGTGYQDHVSQMAPVVKSLQELESQAQLYY
LKMHHNVAA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgactgctttcgaagagtttggtgttcttcctgagctggggaaggctatcgatgagatg
gagtggacacttccaacagatgttcaggccgaagcgatacctctgatcttgggtggtgga
gacgtccttatggctgctgagactggcagcggaaagaccggagccttctgtctgccgatc
ttgcaaatagtttgggagactttgaaagatcttcaggaggggaagactagtaagggtata
ataacgatatcttcggattgtacgttgtcgttgttcgatcgtacagaagctttagccgta
acgccagatggcctgcgatgccagtcgcgcgaccagaaaggctggcacggctgcagggcc
actaagggcgtacacacgaaaggtgcttattattacgaggccactgtgactgacgagggg
ctgtgccgtgtgggctggtccagtcagacttcaaaacttgatcttggtactgacaaggat
ggatatgggtttggaggcacaggcaagaagtctaatgccaaaaactttcatgactatggc
agtgcctatggaaaaaatgatgtaataggttgtatgttaaatttggatactcaagaaatt
atttttaccaagaatggtgaaaacctgggtgttgcctacaacataaagaataacaggtct
ccaacagaaacctacttcccagcagttgtgcttaaaaatgctgaaatgagctttaacttt
ggcaagaccccttttaaatacccacctccagagggctatgtagccatggctgatgccccc
aaggattgtgtgaagacaaatgtcgtgacacctgatggggtttctgaggctgccaaacca
gcgaataaagcaccacaatctattattattgagccctccagagaattagcagaacagacc
tgtaatcaaataacaaaattgaagaagtatctcgagaacccaagcattcgagagctactg
gtcgtcggcgggatcaacgttaaggaccagattagtgctcttaactctggtgtcgacatt
gttgttggtacacctggaagactcgaagatctgatccaaggaggctatctcgctctcacc
cactgtcggttcttcgtgttggacgaagcagacggcttactgaaggccggctacggtccg
ctgatcgaccgcctgcatcggcagataccaaagatcacgtcagatggacgacgcctgcaa
atggtggtctgttctgctacgttacacgcgatggaagttaagaagatggcggagaagtta
atgcatttcccgacgtgggtagaccttaagggcgaagattccgtgccggacacggtacat
cacgtcgtcgttaatgtgaacccacaaactgatcgctcatgggagacactgcacaagcat
atccaaacggatggagttcactctaaagacaacatccgcagcgggaacacgacgccagaa
actttgtcggaagctgtcaagatacttaagggcgagtattgcgtgcgagccatcaaggaa
cacaaaatggacagggccataatcttctgccgcacaaagttggactgcgataacttggag
cgctacttaaagtcgtacggcaacgagtactcgtgcgtttgcctgcacagcgaccgaaaa
cccgccgaacgtaaaggcaacttagagaagttcaaagataatcaggtcaagttccttatt
tgtactgacgtcgcagccagaggcattgatatatccggactgccatttacgatcaatgtg
actttgccggatgagaagtctaactacgttcaccgtatcggtcgtgtcggtcgcgctgat
cgtatgggtctagctatcagcttggtgtcaacagttcctgagaaggtatggtatcacggt
gagtggtgctcttctcgcggacgcaactgctggaatacgaccttgatcgatgaccgtcct
aaaggttgctgcacctggtacaacgagcctcagtacctggcagacattgaggaccacttg
aacatcacgatccagcaagtggaagcagacatcaaggtaccctgcaacgagttcgacggg
aaggtcgtgtacggacagaagaggactcaagtcgggactggataccaggatcacgtgagt
cagatggcgccagtagtaaaatcgctacaggagttggagtcgcaggcgcaactctactat
ctcaaaatgcatcataatgtagctgcttaa
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