Trichoplusia ni (cabbage looper): 113503030
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Entry
113503030 CDS
T05757
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113503030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113503030
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113503030
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_19
ANAPC3
TPR_14
TPR_2
TPR_16
TPR_4
TPR_1
ANAPC8
Motif
Other DBs
NCBI-GeneID:
113503030
NCBI-ProteinID:
XP_026740623
UniProt:
A0A7E5WIT1
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Position
18:complement(4853497..4855382)
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AA seq
565 aa
AA seq
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MANTKDEPVILAHECYVKKDYTGALQHLNELENLIGSSNKRVQHNKAVVEFMISDMKNVD
KLKKNVAQLTGLAFAEIDTKDLSSPFLLYNYAVLLYHSRYYYQCTVILERLLASKNVKDN
KLFQQIVLLLLEATLCRRTYEKTLEVAKVHGEPLKSNNEVSELFERLVSRAQLLLGQKIK
LNLKPDSIENVFIIAQQQYLNGDVKEAATTLGQYKTLKYNYDLKTQGEDIWAAINNNLGV
IYLSIKKPFLASKYFQHAVKEHFKAMECEDSEKLIACRDRPLYVFNLGLALLAANNSEGA
FECLVEAARHYPNNPRIWLHLAECCVKKCCSEEAQQYTVKKLGSGPHTRILLSKEGKDKY
STSGESFAIPSLSLEFAALCLRNAITLLPNQELPADATVPIIQAPPGPPINWKQRCDLKN
STLVLQSYVLLHLQDPLSALMSANELLNQPEPSSCHKAWAHIYAAEALINLDRIADAVEH
LNPPMIHDLVSVLPNQMKDMIAVSVWAKAAVCHILRGDLVTARKILLQINSPRVLPLQMY
LEICTGNIDNCHTLLRKLRFTNLSQ
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggctaacacaaaggacgaaccagtcattctggcacatgaatgttatgtaaaaaaggac
tatacaggagcgttgcagcacctcaatgagttggaaaatctgattggaagtagcaataag
cgagtgcagcataataaagcagtggtcgagttcatgatcagtgacatgaagaacgtggac
aagttaaaaaagaacgttgcacagttaacaggcctcgcatttgcggaaatcgacacgaaa
gacctcagctccccattcttgttgtacaactatgctgtgttattgtaccattcgagatat
tactaccagtgtacggttatactagagcggttactggcttctaagaatgttaaggacaat
aaactatttcagcaaatagtcttactgctcctagaagctactctctgtagacggacctat
gagaaaactttggaagttgctaaagttcatggcgagccactcaaatctaataatgaagta
agtgagctgtttgaaaggcttgtgagtagagcccagttgttactaggacagaaaataaag
ttaaatcttaaacctgactcaatagaaaatgtatttattatagcacaacagcaataccta
aatggagatgttaaagaggcagcaacaaccctaggacaatacaaaacactgaagtataat
tatgacttgaagactcaaggggaagacatatgggcagccataaataataaccttggtgta
atttatttgtctataaaaaagccatttctagcatcaaaatattttcagcatgctgtaaag
gaacattttaaagctatggaatgtgaggacagtgagaaattgatagcatgtagagacaga
cctctttatgtgtttaacttgggcctagcattactggcagctaacaattctgaaggtgct
tttgagtgtttagttgaagctgctcgtcactatccaaacaaccctagaatctggctgcac
ttagcagaatgttgtgttaaaaagtgttgtagtgaagaagcacaacagtatacagttaag
aaattaggcagtggaccacacacccgcatcttgttgtcaaaagaaggaaaagataaatat
tcaacatcaggagaatcatttgccatcccatcactatcattagagtttgcagcactatgt
ttaagaaatgctataacattactacctaaccaggaattgcctgctgatgctactgtgcct
attattcaagctccaccaggcccacctattaactggaaacagagatgtgatctgaaaaat
tctacattagttctccagagttatgtgttattacatctacaggatccactgtcagccctc
atgagtgcaaatgaattgttaaatcagccagagccatcaagttgccataaagcatgggca
catatttatgcagccgaggcactcataaacttggaccgaatagcagatgcagtggaacat
ctaaacccaccgatgatacatgatctagtgtcagtattgccaaatcaaatgaaagatatg
attgcagtgagtgtgtgggcgaaagcagcagtgtgtcacatcttaagaggtgacttagta
actgcaagaaagatacttttacaaataaattcgccacgagttctaccactgcaaatgtat
ttagaaatatgtacaggaaatatagataattgccacacattactaagaaaactcaggttt
acaaatttatcacaatga
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