Trichoplusia ni (cabbage looper): 113503368
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Entry
113503368 CDS
T05757
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113503368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113503368
03032 DNA replication proteins [BR:
tnl03032
]
113503368
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113503368
mRNA cycle factors
Common to processing body (P body) and stress granule
113503368
DNA replication proteins [BR:
tnl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
113503368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
113503368
NCBI-ProteinID:
XP_026741067
UniProt:
A0A7E5WL39
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All DBs
Position
19:5435446..5439603
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AA seq
988 aa
AA seq
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MKNGSNEILEAKVAERTERAKKLYRYVTDVARRIGDMTTASQSIIDLFSTHLEVQRQKLR
DNCEKLLFLDPINYGKKSLELLWRKVYYETISTAKKLREIDAENDSYLFTHIVCGIGHFH
HFISRMESEMKLQIKELDYTFLHLDGDFKDNTEGPTDEEVQFSRSALHSCLIYLGDLSRY
QVEIFHAFEPSIAARYYLQAAHVDMSSGMPYNQLGNLYLDKNYNLDSVCFYIQCLNCTSP
FEGAIGNLTKIFEKNAQFFDSLNSPETLTQTEHIQNTITNFLSLIEIWYLNKNDTNIPQR
CSTIAQEIKIAMDFMKPPLPDVNTNYNEYIQAVDEEGTNPSCLNANLVHKIVLICLFTIT
KVTETDEVKAFACKAFTLALLSQLLQKLLKQLESLGLKNPAAKYKSKSTTLQSTRPYKVL
EEIETTNKSSDPEPSESEMPNSEVENNHDNVEITSKDLPLDETKEILQNGDAKANIKKTL
TKRRRRRRLASTDSSDMSDIDTETSDIEVFESCSEDEDLSGSSCHSDGSASGDSCIEASD
TEDILEKNVGDEENEIIKHVTTEKPVNGDLNEKQKKNDNEFQHNSLNNNVLDVQGLQNFL
LGDNYLPSIKLLQDWALNEKDLILSCGDSGESLFQCVVDLLNILTYYFNSKSNEDKECHI
LEYARSAAKKLKLEHKTIPLPEDINLRGTNICKFDKDAAEWNMLERYKLSFYEENILRIL
NFVDFGNHIAKIIPRIRFNRSLKVFYLKKIPPSKVTTKVNHKRSREWHNSKKPHVESGEG
GLLRRLGRLWLASQVRELERSGQAPVPALLALDTNALHKHLRRVKQLLRARNFVLLIPTV
VLQELDNLKREQSTARDAIRWLEVQLRSGSRFLRAQRPGQSKPLPLLKYPRKAPPHIHNF
IQIMEFCNHFMADEKQIQGGNGDPDNSLQGKSTPLLILLVGNEPGTEEEQYKEFSVTGAA
QAAGISVEYIGDFYTKWRQTVHKNGKKR
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacggatctaatgaaattttggaggctaaagttgccgagcgcactgaacgtgcc
aaaaaactctatcgctatgtaaccgacgtagcaaggcgcattggagacatgacaacagca
agtcaatccatcatagacctcttttcaactcatcttgaagtccaacggcagaagttaaga
gataactgtgaaaagcttctgtttcttgatcccatcaactatggaaagaagtcacttgaa
ttactgtggaggaaagtttactatgaaaccatatcaacagcaaagaagttaagagaaata
gatgctgaaaatgacagctatctgttcactcatattgtttgtggaattggccattttcac
cattttatttcaagaatggagtcagaaatgaagttgcaaattaaggagttggattataca
tttttgcatctagatggagacttcaaagataacactgaggggcccacggatgaggaagtt
cagttcagtcgctcagctttacattcatgtctcatctacctcggagacttgtctcgttat
caagtggagatatttcatgcttttgaaccatctatagctgcaagatattacctgcaggct
gcacatgttgatatgtcatctggcatgccttacaatcagttaggtaatctctacctagat
aaaaattataacctggattctgtttgcttctacattcagtgtttaaattgcacatcaccc
tttgaaggggctattgggaatttgacaaagatatttgaaaaaaatgcccagttctttgat
tcactaaacagtcctgagacattaacacaaactgagcatatacaaaatactataacaaac
tttctgtccttgatagaaatctggtacctaaacaaaaatgatacaaatattccacaaaga
tgcagcactattgctcaagaaataaaaatagccatggactttatgaaaccaccactgcct
gatgttaacaccaactataatgaatatatacaggctgttgatgaggaaggcacaaaccca
tcatgtttgaatgccaatttggtgcacaaaatagtgttgatttgtttgtttaccattaca
aaagtaacagaaactgatgaagtaaaagcctttgcctgcaaggcatttacattagccctt
ctatcacaactacttcagaaattactaaaacagttagagtcacttggtttgaaaaaccca
gctgctaaatataaatcgaaaagtacgacactccagagtacaagaccttacaaagtgtta
gaagaaattgaaacaaccaataaatctagtgacccagaacctagtgaatctgaaatgcct
aatagtgaagtcgaaaacaatcacgacaatgtcgaaattacatccaaagacttaccatta
gatgagactaaagagattttacaaaatggagatgccaaagctaatataaagaaaacatta
actaagcgacgtcgacgaaggcgccttgcatcaacagatagttctgatatgagtgatatt
gatacagaaactagtgacattgaagtatttgagtcctgctctgaggatgaagatctttca
ggctcaagttgtcactctgatggatctgccagtggagattcttgtattgaggcttctgat
acagaagatattcttgaaaaaaatgttggagatgaagaaaacgaaatcatcaaacatgta
accacagaaaagcctgtaaatggtgatttgaatgagaagcagaagaaaaatgataatgaa
tttcaacacaatagtcttaacaacaatgtactggatgtccaaggactacaaaacttttta
cttggggataactatttgccaagcattaaactactccaggattgggccctcaatgaaaaa
gatttgatcttatcttgtggtgacagtggtgaatcacttttccagtgtgttgtcgacttg
ctcaatattttgacatattattttaattcaaaatcgaatgaagataaagaatgtcatatt
ctcgagtatgcaaggagtgctgcaaagaaattgaaactggagcataagacaattcccctt
ccagaagacatcaacttaagaggcactaacatttgtaaatttgataaagatgcagcagaa
tggaacatgttagagagatacaaattgtcattctatgaagaaaacattctaagaatattg
aatttcgtcgacttcggaaatcatattgcaaagataatccctcgcataagatttaatagg
tcacttaaagtattctatctgaagaaaatacctccttcaaaggtgactactaaagtcaat
cataaaagaagcagagagtggcataactctaaaaaacctcatgttgaatcaggcgagggt
ggtttactgagacgcttggggcggttatggctggcatctcaagtacgcgagttagagcga
agcggccaggcgccagtgcctgctctacttgccctcgatacaaatgcgttacacaagcac
ttgcgccgcgtcaaacaactgttgcgagcccgaaacttcgtacttctcatccctaccgtc
gtgttacaagagttggataatctgaagcgcgaacaaagtacggcgcgtgatgcgattcgt
tggcttgaagtgcaactgcgaagtggatctaggttcttgcgagcccaacgacctgggcaa
tctaaacctctaccgcttctgaagtatcctcgcaaggcgccgccacacatccataacttt
atacaaattatggaattttgcaaccactttatggctgacgaaaagcaaattcaaggcggt
aatggcgatcctgacaattcactgcaaggaaaatctactcctctcttgatattgcttgtt
ggaaatgagccaggcactgaagaagaacagtataaagaatttagtgtgacaggggccgcg
caggccgctgggatatctgtcgagtacatcggagacttctacactaagtggcgccagact
gttcacaaaaacggtaaaaagagatga
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