Trichoplusia ni (cabbage looper): 113503603
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Entry
113503603 CDS
T05757
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03013
Nucleocytoplasmic transport
tnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113503603
03015 mRNA surveillance pathway
113503603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113503603
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113503603
5.6.2.5 RNA 5'-3' helicase
113503603
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113503603
mRNA cycle factors
Common to processing body (P body) and stress granule
113503603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
AAA_16
AAA_22
NPHP3_N
SRP54
nSTAND3
AAA_5
UvrD_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
113503603
NCBI-ProteinID:
XP_026741454
UniProt:
A0A7E5WL95
LinkDB
All DBs
Position
19:complement(2239161..2247612)
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AA seq
1038 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQ
VNGLGRSDLSSKVSNVTNAIAELQFEEEDEALYSKELPDHACKYCGIHDPATVVMCNICN
KWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKA
DSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQQ
IGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK
ESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHVI
KVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGYI
YRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVT
SATIVYQLVRQNSGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLAL
HEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVGA
GDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWP
RPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQR
SYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLN
VALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLV
NAQNPGSHFMSTSMFDAREAMVPGSIYDRARPPRDPLAYVGPERAAMLHAPVPPAAFSAH
RGLARPPLSAAQRSGRRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGL
LSQDSTYQGGFRARCSQY
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagacgcctacggaccgagctcacaaacactcacgtttttggacactgaggaa
gcggatcttattggggctgatactcagggctccgaattcgaattcactgactttaccctt
ccatcgcagagccaaacacaggcttctcaacatgaccatggcttgtcatcttcaaatcag
gtgaatggtctgggacgttcagatttgtcatcaaaagtttctaacgtgaccaatgccata
gcagagttgcaatttgaggaagaagatgaagccttgtacagcaaagaattgcctgaccac
gcttgcaagtattgtggcatacatgacccggccactgttgtcatgtgcaatatttgcaac
aagtggttttgcaacggtcgtgggaacacgtcaggctcacatatcatcaaccacttggtc
cgtgccaagcacaaggaagctgcgttacatcgtgacggaccgctaggagaaacattattg
gaatgctactcatgcggtgccaggaatgtcttcgtacttggctttataccagccaaggca
gattccgtagttgtactgctttgcaggcaaccttgcgcagctcaaagttcattgaaggat
atgaactgggatcaagaacagtggaaaccattaatatctgaccgcgcctttctatcttgg
ctggtgaaggtgccttctgaggctgagcagatgagagcccgtcaagtgactccacaacag
attggacgtcttgaagagctgtggcgtgacaatgtggacgctacttttcaagacctggag
aagcctggcgtggatgaagagccccatcaagtgctgctgagatacgaagacggctaccaa
taccaaaacatctttggtccactagtgaaactagaagcggactacgacaagaggctcaaa
gagtctcaaactcaagagggtattgaagtccgctgggacgtcggtctcaataagaagacc
attgcgtacttcacgctcgctaaaactgacagtgatatgaaactcatgcatggagatgaa
cttagattgagatatgtaggcgagttgcataaggcgtggtctggcgtgggtcacgtgatc
aaggtaccggataactacggcgacgacgtcggcctcgagctgaagagcggcgccggcgca
ccgctggactgcacgtctaacttcgtcgttgatttcatctggaagagtacatcctttgac
agaatgcagctagctttgcgtaagtttgcggtcgatgactcgtcggtgtctggctacatc
taccgccgtcttttaggccatgaggtcgaagaagttttgttcagagttcatctgccgaaa
catttcagtgctccaaacttgcctgacctaaatcgttctcaggtatatgctgtgaagcac
gctctacagcgtcctctctctctgattcaaggaccaccgggtacaggtaaaactgtgact
tctgcaacaatcgtataccaactggtgcgacaaaacagcggtccagtgctcgtctgtgct
ccctctaatactgccgtggaccaactaacggaaaagatccacagaacaggtctcaaagta
gtcagactgtgcgctaaatctcgtgaagctatggagtcatcggtctcgtttttagccctt
cacgagcaagcgagagctcttggctcggcagacagcgaactaagaaaacttacgcggctc
aaggaagaggccggtgagctgtccgccgctgatgagaggaggtaccgagctctgcgccgc
gccgctgagagacgcctcttagatgctgctgatgtggtgtgtaccacctgtgtaggtgct
ggagatcccagggtcgcccgcatgcgcttccaatccatactcatcgacgaaggtatgcag
tctacggaacctgagtgtatggtacctgtcgtactgggtgcgaggcaattgatcctcgtt
ggagaccactgccaacttggtccagtagttatgtgcaagaaggctgccaaagctggactg
agccaaagtcttttcgagcgtttagtcgtccttggtatccgcccgttccgccttgaagtc
caatatcggatgcatcctgagttatctcgattcccctccgatttcttctatgagggttca
ttacagaatggtgtaagcgcggaagagcgtcgcttgcataaaattgattttccgtggccc
aggccggaccgccctatgttcttctacgtaactcaaggacaagaggaaattgcgggttct
ggaacatcttatttaaacagaacagaagcagccaatgtagaaaaattgaccacaagattt
ttaaaagcgggtgttcgtcctgaacagataggtatcattacaccgtacgaaggccagcgc
tcctacctcgtacagcacatgcaatatcagggaagcttacatgccaaactttaccaagaa
atcgaagtggccagtgtagacgcgttccaaggcagagaaaaggatattatcatcatgtct
tgtgtccgttcaaacgaacatcaaggtatcggattcttaagcgacccgcgtcgtctgaac
gtcgctctaacacgcgccaaatatggtctgatagttgtaggtaaccccaaggtgttgagt
aaacagcctttgtggaatcatttgttagcattctacaaggaacgccgcgtactcacggaa
ggacccctatccaatctaaaggaatctgcgatccaattcgccaagccaaagaaactggtg
aacgcccagaacccgggctcccacttcatgtcgacgtcgatgttcgacgcgcgcgaggcg
atggtgccgggctccatctacgaccgcgcgcggccgccgcgcgacccgctggcctacgtg
ggccccgagcgcgccgccatgctgcacgcgcccgtgccgcccgccgccttctcggcgcac
cgcggcctggcgcggccgccgctcagcgccgcgcagcgctcgggccgccgccgcccgccg
cgcctgtcgcaggagccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcgtcg
cagcccgacttcagccaggagtcggcggcgcccgactgcccgtcgcagccggacgggctg
ctgtcccaggactccacgtaccagggcgggttccgcgcacgctgcagccagtactga
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