KEGG   Trichoplusia ni (cabbage looper): 113503864
Entry
113503864         CDS       T05757                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113503864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tnl03041]
    113503864
Spliceosome [BR:tnl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113503864
 Complex C
   U5 SnRNP specific factors
    113503864
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_RFWD3 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_NWD2_C WD_LRWD1 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 KNTC1_N Cytochrom_D1 WDR54
Other DBs
NCBI-GeneID: 113503864
NCBI-ProteinID: XP_026741791
UniProt: A0A7E5WNS6
LinkDB
Position
20:5050197..5052810
AA seq 349 aa
MPEIEAKRKADDLSLVPAKRTRHEISVVGTREKAVVTSSVPRTSNLYAPIMLLEGHQGEI
FASKFHPEGKHLASAGFDRQIFLWNVYGQCENVMVMKGHTGAVMELCFSPDGSHLYSCAT
DNTVAVWDVPTGTRIKKLKGHASFVNSCSGARRGPELLVSASDDNTIKLWDARKRNPIAS
FDSGYPVTSVLFNDTAEKIISGGIDNVVKVWDIRNNQLSYKIKGHTDTITGMALSYDGSY
LLSNSMDNSLRIWDVRPFAPSERCVKLMSGHQHNFEKNLLRCAWSHDGSKVAAGSADRYL
YIWDTTSRRVLYKLPGHNGSVNDVDFHRNEPIVLSASSDKQLYLGEIDH
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgccagaaatagaagcaaaaagaaaagcggatgatttatccctagttcccgcaaaacga
acccgtcatgagatatctgttgttggtactagagagaaggctgtggtgacttcgtcggtg
cccagaacatcgaatctttatgcacctataatgttattagaaggacatcagggtgaaata
tttgcatctaaatttcaccctgaaggtaaacatttggcttcggctggctttgataggcaa
atatttctatggaatgtgtatggacagtgtgaaaatgtaatggtgatgaaaggccacact
ggcgctgtcatggagctgtgcttttctcctgatggctcccacctgtactcctgtgccaca
gacaacacggtggctgtatgggatgtacctacaggcacaagaatcaagaaacttaaagga
catgctagttttgttaactcttgctcaggtgcgagaagaggtccagagctcctagtatca
gcttcagatgataacacaataaagctatgggatgcaagaaagcgtaaccccatagcgtca
tttgatagcgggtaccccgtgacatcagtcctgtttaatgacacggctgagaaaataata
tcaggaggcatagacaatgtagtcaaggtttgggacatcagaaacaatcagctatcatac
aagattaagggccacactgatactatcacaggcatggccctctcgtacgacggctcgtac
ctgctgtcgaactcgatggacaactcgcttcggatatgggacgtgcggcccttcgcgccg
tccgagcgctgcgtcaagctcatgtcgggacaccagcacaacttcgagaagaacctgctg
cgctgcgcctggtcacacgacggatctaaggtggcggcgggttctgcggaccgctacctg
tacatctgggacacgacgtcgcggcgcgtgctgtacaagctgccgggacacaacggctcc
gtcaacgacgtcgacttccatcgtaacgagcccatcgtgctctctgcctccagcgacaag
caactgtacctcggcgaaatcgatcattaa

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