Trichoplusia ni (cabbage looper): 113503924
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Entry
113503924 CDS
T05757
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113503924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnl03021
]
113503924
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113503924
Transcription machinery [BR:
tnl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113503924
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113503924
U7-dependent histone pre-mRNA processing factors
113503924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Symplekin_C
Neuromodulin
Motif
Other DBs
NCBI-GeneID:
113503924
NCBI-ProteinID:
XP_026741868
UniProt:
A0A7E5WMB0
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Position
20:604851..614207
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AA seq
1096 aa
AA seq
DB search
MASSKQSFTAAQNQLVQWINEAGMAEGGRRAELLRKVIELLLHQCSSMLPVYVENVLSFV
NDKSTEVRKQVISFIEDLSKQHPDFLPKIIGQLRLLVIDGVIAVQKRAIQASSIIYRNTL
IWICKGTADISDMQLVWENITQLKLLVLNMIDNDNEGIRTHSIKFLEEVVLLQTTSEGSG
DEFSLETLPPNLTFINRRALEEESEHIFKLLVKFHNSQHISSVNLMACMTTLCLLAKFRP
KFMPRVIQALGDLHTTLPPTLSQSQVNSVRKHLKMLLVNLIKHPSSNDMMPQLTQLLIDI
GMTTQEINKAIPKERRNKRLGEIKNGDTPAKRIRIDSPQSNSQGSDSNSNSKADFNAYDD
DSQPPVTSTSQISTEKLVVTEDSLFDGLNNVENVVNLVTSTLVNCLPTEMPSNFISAYKP
IPNSGSKVQKRNLAKMILAVINKEEPVIPQAPTTSLSDLAAKIPLLRDDEEKVTLKNAVA
KLQESTKADRQIESAVSKLMEETRQEHLKEEERKQKDKEKPVPPPTPTVPKLKQKVKLLK
LQEITRPIPKQIKERLIVQAVGRILNAETESIIGGAANIRAKFITIFASSYTPELRDLVL
NYILDDPASRIDLALSWLYEEYAFMQGFNRHPVTLQPKVHEKHDQNYNQLLCALITQICE
RGDPVMDSSKEMLLKRIYSECPVVTDEAVDYLKHLVTEDKVAFLALELLEELCIMRPPRA
HKFVSSLLCHVLNENEEIRDAALKASVKIYKRGTEAVRKVVEKHALLYLGFLSLAQPPPE
LRGARVWTDDLYHVCLTLVMALLAENEELIIEVARVYGSAGSEAKRCVLRGIESPLRAAA
ARQPAALSPAFSALLDECPRGAETLLTRLVHIFTEKAPPSPELVSKVRELYATRVSDVRF
LIPVLTGLSKREILAALPKLIKQNPMVVKEVFNKLLGLQNPHDENAPVYSVMIFTPAELL
VALHLIDPSKADIMYIIKATALCFAEKQTYTQDVLSAVLQRLSEEPEVPVLMMRTVLQAL
TLYPSMGPLVLNILQLLMEKEVWTNKVVWEGWVKCCLRLAPMSGALLAGLGRRALAAAGG
VPGLLAALRAHVAALP
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagtaaacagagttttacggctgctcaaaatcagctcgtacaatggataaac
gaggcgggtatggccgagggaggccgaagggccgaattgttaagaaaagtcatcgaactg
ttgcttcaccagtgctcttcaatgctcccagtgtatgtagaaaacgtattgagcttcgtc
aacgacaaatctaccgaagtcaggaaacaggtcatatcttttattgaagatttaagtaaa
caacacccagacttcttaccaaaaataatagggcagcttcggctattggttattgacggt
gtgattgctgtccaaaagagagccatacaggcatccagtattatttaccgtaacactctc
atatggatatgtaagggtaccgcagatatctcagacatgcagctagtctgggagaacatc
acacaactgaagttgctagtcctaaatatgatagacaatgataacgaaggtattaggacc
cactcaatcaagttcttggaggaggtagtgttactgcagacaaccagtgaaggctctgga
gatgagttcagcctggagacactgcctccaaacctcactttcatcaatcgacgggcttta
gaagaagaatctgagcacattttcaaattgctagtaaaattccacaactcccaacacata
tctagcgtgaacttgatggcttgtatgacgacactgtgcctactcgctaagttcagacca
aagttcatgccccgagtcatacaagcgttaggcgacttgcacacaacactgccaccaaca
ctatctcagtcacaggtcaattcagtgaggaaacacctgaaaatgctccttgtgaatctc
ataaagcatccgtcatcgaatgacatgatgccgcaattgacgcagctgctgatagatata
gggatgacgacacaggagattaataaggctatacctaaagagaggaggaataaacgattg
ggcgaaatcaagaatggtgacacccctgcaaagaggattaggatagattctcctcagtcg
aacagccagggaagtgatagcaacagcaacagtaaggcagactttaacgcgtatgatgat
gacagtcaacccccagtaacatcaaccagccaaataagtacagaaaagttggtagtaacg
gaagactcgctgttcgacggtcttaacaatgttgaaaatgttgttaaccttgtaacaagc
acactggtcaactgtctacccactgaaatgccttctaacttcataagtgcctacaaaccc
atccctaactcgggcagcaaggtacagaagaggaatctagccaaaatgattctggctgtc
atcaataaagaagagcctgtaataccacaagcaccaactacctccttatctgacttggct
gcgaaaatacctttactgagagatgatgaagaaaaagtgaccctgaaaaatgctgtagct
aagttacaagagtctaccaaagccgatagacagattgaaagcgcagtatcgaagcttatg
gaggaaacgagacaggaacacttgaaggaagaggagagaaaacaaaaggacaaagagaaa
cctgtccctccgccaacacccactgtaccaaagttaaaacagaaggtgaagctactaaaa
ctgcaggaaatcactcgtcccatccccaaacagattaaagaaaggttgatagtgcaagca
gttggaaggatactcaacgcggaaacagaaagcattatcggtggagctgcaaacatacgt
gcaaagttcataacaatattcgcatcaagttacacaccagaattgagggatttggtcctt
aattacatattagacgaccccgcaagcaggatcgacttagctctatcatggttgtacgaa
gagtacgctttcatgcaaggttttaaccgtcacccagttaccttacaacccaaagtccat
gagaaacacgatcagaattacaaccagttgctctgtgcgttgatcactcagatttgtgaa
agaggtgatccggtcatggatagttctaaggagatgttgttaaaaaggatttattcagag
tgtccagttgttactgatgaggcagtcgattacttgaagcatttggtgacggaggataag
gtggcgtttttagctctagagttgttggaggagctgtgtattatgaggccaccgagggcg
cataagtttgtgtcgtcgttgctttgtcatgtgttgaatgaaaacgaggaaatccgcgat
gctgccctgaaagcttcggtgaagatctacaagcgcggcacggaggcggtccgcaaggtg
gtggagaagcacgcgctgctgtacctgggcttcctgtcgctggcgcagccgccgcccgag
ctgcgcggggcccgcgtctggaccgacgacctctaccacgtctgtctcactctcgtcatg
gcgctgctcgctgagaatgaagagttgataatcgaggtggctcgtgtgtacggtagcgcg
gggtcggaggccaagcgctgcgtgttgcgcggcatcgagtccccgctgcgggcggcggcc
gcgcgccagcccgccgcgctcagccccgccttcagcgcgctgctggacgagtgtccgcgc
ggggccgagaccctgctcaccaggctcgtgcatatattcactgagaaagcgcccccttcg
ccggagttggtgtctaaagtgcgggagttgtacgctacgcgggtgtcggacgtgcggttc
ctgataccggtactcacgggcctgtctaagagagagattttggccgcactaccaaagctt
atcaaacaaaacccaatggttgtaaaggaagtcttcaacaagctgctaggcctgcagaat
ccacacgatgaaaatgcaccagtgtatagtgttatgattttcactccggccgagctcttg
gtggctctgcatcttatagacccgagtaaggcggatatcatgtacattatcaaggccaca
gcgctgtgcttcgcagagaaacagacgtatacacaagatgtactatcagcagtattacaa
aggttatcagaggagccagaagtccccgttctgatgatgcggacggtgttgcaagcgtta
acactatatccctctatggggcctctcgtactcaatatactgcagttgcttatggagaaa
gaggtttggacgaacaaagtagtgtgggagggctgggtgaagtgctgcctgcggctggcg
cctatgtcgggcgcgctgctggcggggctggggcggcgcgcgctggcggcggcgggcggc
gtgcccggcctgctggcggccctgcgcgcgcacgtggccgcgctgccg
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