Trichoplusia ni (cabbage looper): 113504520
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Entry
113504520 CDS
T05757
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113504520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tnl03041
]
113504520
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113504520
Spliceosome [BR:
tnl03041
]
Complex C
Other components
Step II factors
113504520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
GIPC1_GH2
Flavi_DEAD
nSTAND3
AAA_16
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
113504520
NCBI-ProteinID:
XP_026742662
UniProt:
A0A7E5WQN6
LinkDB
All DBs
Position
22:complement(5008680..5014871)
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AA seq
1255 aa
AA seq
DB search
MDEVAKLEHLSLVSKVCTELDNHLGLNDKDLAEFIIDIADKNPTFDCFKKALVENGAEFS
DSFMTNLLRIIQHMKPANNPLQKGETSSESSNPLANKFPGLAIPNEKPPHFSSDEESEEE
KDEKKTKRLTSKDIFKNEAKTKTNDSIVDQAMAELEALAPSNVTCAPVKEPLKKEKENIK
EEVKKRERSRSRDRKDSSKKRERSRDRRDVKKRRSKSRDRRSRSRDRRSRSRDRDRDRRR
RSRSRPTSSRHRSRDRHRRSRSRGKRSPSREREREDRYGDYKKPRKRSPEVEMSDDPEPG
KIYNGRVANIVPFGCFVQIEGVRKRWEGLVHISQLRSEGRVTNVSDVVNRGDKVKVKVLS
VTGQKVSLTMKDVCQDTGKDLNPTSHAHLEAEREGRNPDRPPPNATVLAGLQGGLDPDED
SSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDGEADIEIELVEEEP
PFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMIQREQEMESLPMGLN
KNWIDPLPESDGRALAANMRGTGITPQDLPEWKKHVIGGKKSSFGKKTNLSLLEQRQSLP
IYKLRDELTKAVADNQILIVIGETGSGKTTQITQYLAECGLTARGKIACTQPRRVAAMSV
AKRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMDLDLKTYSVIMLDE
AHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEV
LYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPE
LIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYN
SKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLA
TTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGLLTRLGRRMAEFPLE
PNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLTLL
AVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAAKNTVRIQKT
ICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVT
TIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagttgctaaactagagcatctgtccctcgtatcaaaggtctgcactgagtta
gacaaccatttaggattaaatgataaagatttagctgaattcattatagatattgcagat
aagaatccaacatttgattgcttcaagaaagcacttgtagaaaatggcgctgaattttcc
gattcgtttatgaccaacttgttgcgtattatacagcacatgaaacctgctaacaatcct
ttacaaaaaggtgaaactagcagtgaaagtagcaacccattggcaaacaagttccctggt
ctagctatacctaatgagaaacccccacatttctcatctgatgaagaaagtgaagaggag
aaagatgagaagaagaccaaaagactgacatcaaaagatatattcaaaaatgaagcaaag
accaaaacaaatgattctattgttgaccaagctatggctgagttagaagcactagcacca
tctaatgttacatgtgcccctgtaaaagaaccgttgaagaaagagaaagagaacataaag
gaggaggtgaaaaagagagaaagaagccgtagtagggaccgcaaagatagcagcaaaaag
agagaaaggtcaagagacaggagagacgtgaaaaagaggcgcagcaaaagcagagatagg
aggagtcgcagtagggaccgtaggagtagaagtcgtgatagagacagggatagaaggagg
cggtctagaagtcgtcccacatctagccgacacagatctagggatagacacaggagatct
agatcaagaggcaagagatctccatcaagggagagggaaagagaagacagatatggtgat
tataagaagcccagaaagaggagtccagaggttgaaatgagtgatgatccagagcctggg
aaaatatacaatgggcgtgtggcaaacattgttccatttggctgctttgtccaaattgag
ggagtgaggaagaggtgggagggtctggtacacatctcccagctgcgctctgagggcaga
gtcaccaatgtgtctgatgtagtcaacagaggggacaaagtgaaggtcaaagtactatct
gtcactggacaaaaggtatctctcaccatgaaggatgtttgccaagacactggtaaagat
ctcaatcctacatcacatgcacatttggaggctgaacgtgagggtcgtaatccagatcgt
ccgccaccgaatgccaccgtcctggccggcttgcagggcggtcttgaccccgacgaggat
tccagccgcaagcgagtcactaggatctccagccccgaacggtgggagatcaaacaaatg
atatcatcaggagtaatagacaagagcgaattgccagactttgatgaagagacaggtttg
ctaccgaaagacgaagacggtgaggcagacatcgaaatagaacttgtggaagaagaacct
ccgttcctgcaaggtcatggccgcgcgctacacgacctctcgccagtcaggatcgtgaag
aaccctgacggctcactagcacaagccgctatgatgcagtcagccctagccaaggagaga
agagaacagaagatgatacagagagaacaagagatggaaagcctgcctatgggacttaac
aaaaactggatagatccattacctgaaagtgatggaagagcattagccgcaaatatgaga
ggaactggtatcacaccacaggatctgcccgagtggaagaaacacgtcattggaggaaag
aaatcgtcttttggaaagaaaaccaatttgtcattgttggaacaaagacagtcactgcca
atttataagctgagagatgagttaactaaggcggtagcagacaatcagatcttgattgtg
atcggcgagacagggtcgggcaagacaacgcagatcacgcagtacctggcggagtgcggg
ctgacggcgcgcggcaagatcgcctgcacacagccgcgcagggtcgccgccatgtccgtg
gctaagcgtgtggccgaggagttcggctgcaggctcggacaggaggtcggatacactatc
cggtttgaggactgcaccagccccgagactgtcatcaagtacatgacagacggtatgtta
ctccgcgaatgtctgatggaccttgatcttaagacatactcagtaatcatgttggacgag
gctcacgagcgcaccatacacaccgacgtcctcttcggactgctcaagcaggccgtccag
aagcggcccgaacttaaactaatcgttacttcagctacactcgacgccgtcaagttctcc
cagtacttcttcgaagctcccatcttcaccatccccggcagaaccttccctgtagaagtc
ctgtacacaaaggaaccagaaacggactacttggacgcgtcattgatcacagtcatgcag
atacatttgagggaacctccaggagatatcctgttgttcttgactggtcaggaagagatc
gacaccgcttgtgagattctgtacgagaggatgaagtccttaggtcctgatgtaccggag
ctgatcattttacctgtttactctgccttgccatctgaaatgcagacacgaatctttgaa
ccagcgccgcctggctcccgaaaggtggtcatagccaccaatattgcggaaacctctctt
actattgacggaatatactacgtggtcgatcccggattcgtgaagcaaaaagtttacaac
tccaagactggaatggactccttggttgtgacgccaatttcacaggcggccgcgaagcag
cgcgcgggtcgtgcgggccgcacgggccccggcaagtgctaccgcctctacacggagcgc
gcctaccgggacgagatgctgcccacgcccgtacctgagatacagcggactaacctcgct
accacggtgctacaattgaagaccatgggtattaacgacctgcttcacttcgacttcatg
gacgcgccgccggtggagtcgctcatcatggcgctggagcagctgcactcgctctccgcg
ctcgactccgagggactgctcacgcgactgggacggaggatggctgaattcccattggag
ccaaacttatcgaagatcctcatcatgtcagtagcactacaatgttccgatgaaatcctt
actatagtatcaatgttgagcgttcaaaacgtgttctaccggccgaaagacaagcaggca
ttagctgatcagaagaaggctaagttcaaccagccagaaggtgaccacctcacactgctg
gccgtgtataacagttggaggaacaacaagttctccaacgcttggtgctacgagaacttc
gtacagatccggacgctgaagcgagctcaggacgtcaggaaacaactgctcggtattatg
gatagacacaaactggacgtggtatcggcggcaaagaacacggtgcgcatacagaagacg
atatgttcaggctttttcaggaacgccgctaagaaggacccgcaggagggctacaggaca
cttgtggacagccaagtggtttacatacatccctccagcgccctcttcaatagacaacca
gagtgggtaatctatcacgagctcgtgcaaacgacaaaggagtacatgcgcgaagtgaca
accatagatccaaaatggctggtcgagttcgcgcccgccttcttcaagttctcagatccc
acgaaactgtccaagttcaagaagaaccagagattggagccgctatacaataaatatgaa
gaacccaacgcttggagaatatccagagtgcgcagaaggagaaattaa
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