Trichoplusia ni (cabbage looper): 113504863
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Entry
113504863 CDS
T05757
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tnl
Trichoplusia ni (cabbage looper)
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tnl03041
]
113504863
Spliceosome [BR:
tnl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
113504863
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
Mononeg_mRNAcap
TPR_15
Motif
Other DBs
NCBI-GeneID:
113504863
NCBI-ProteinID:
XP_026743146
UniProt:
A0A7E5WSK8
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All DBs
Position
23:complement(5216204..5225199)
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AA seq
1007 aa
AA seq
DB search
MDDEASSDLQKCLSDGPMDTDEGPLINENSNGLSHLLTEGEFNSVEAAVDESSTSNQGFL
NAVELSAGSVGDYLDTNTDGFNTDPFDVGDNAVTFPSDSLNNVLTDGDSLLSDAAYKASS
DTDGDVTESQKATVDTDFEVSEISDAGYSMPADDMTQNKTDGSAGDAVETVGIKVEEAVE
TPLEKMEDSSNDEQIRASIKEETLDQNHILKNEKDDYEDGKEDNKDIPKAAIKTDIVLKQ
ENDVKADVEDGNAVDTGILVKEETATPTKKSNKVGGAEETEVVSEDELPEVQKPSIKDAE
NVSDDELPGPKPAELPADTEVVSEDELPSSKKESKESRKRKTEDDPDGYDPGSPTSESES
SNKKQAVAKNGESKPIPAEKRTSIDEKPKKKTLPELDKYWKVVNDDPTDFTGWTYLLQYV
DQESDVEAAREAYDAFLSHYPYCYGYWRKYADYEKRKGSKKKCLEVLERGLKAIPLSVDL
WIHFLNHIKATRTEDHAFIRSQYERAIEACGLEFRSDRLWESYIKWEAENGSALNVTNIY
DRLLATPTLGYTSHFDNFQEHVMSEPVAGVVSRAELVRLRGEVRDAAGAAPQLDLPPGED
EPLDHVASEEEAQAIKERVIAARRKVHKTTGEQVAARWTFEEGIKRPYFHVKPLERCQLK
NWKSYLEWEKQHGSLKRALVLHERCLIACALYEEFWMRLIKFLEERVEAHPELVAVQREV
LERACSVHHLDKPELHLHWAHFEEAHGCPARAADILDRIEKACPCLVQIQYRCLQPMRVN
LERRRGDYEKCIQLYEGYIASAKNKSVASALSIKYARFLFHVRRSPAAARAALDAAVLRD
PLNPRLHAQRLDLALHTPGTPYAELDELVSSYEQQEGAELETSAMMAWRRRELAEELGDA
AAARAAHAHARALAKHLRKRARKDKHDPPPPPCNSTVDCTKKKECTVATTNCTPTASSGN
SYYQAPAAAASYEQSYAQPYQPAWGYQQPPGPYQHHPHPWPQYPNYY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgaggcgagttcagatttgcagaagtgtctgtccgacggacccatggatacg
gacgaaggaccattgataaatgaaaattcgaatggattatcgcatttgttgacggagggg
gagttcaacagtgtcgaggcggcggtggacgagtcatctacttcgaatcaaggtttcctc
aatgcggtggagctgtctgcgggtagcgttggcgactacctggacaccaacacagatggg
ttcaacactgaccctttcgatgtgggcgataatgcagtcacattccccagtgactcgctc
aataacgtgctcaccgacggcgactcgcttcttagtgacgcagcgtataaggcctcctct
gatactgatggtgatgttacagaaagtcagaaggcgacggtggatactgactttgaagtg
tctgagatatctgatgctggctattcaatgccagctgacgacatgacacaaaacaaaaca
gatggcagtgcaggagatgcagttgagacagtgggtattaaagttgaagaagctgtagaa
actcctctagaaaagatggaagactcaagcaatgatgagcagataagagcttcaataaaa
gaagagactttggatcaaaatcacattctgaagaatgaaaaagatgattatgaagatgga
aaagaagataataaagatattcccaaagctgctataaaaactgatatagttttaaaacaa
gaaaatgatgttaaagctgatgttgaagatgggaatgctgtggacactggcattttagtt
aaggaagaaactgctactcctaccaaaaaaagtaacaaggtgggaggggctgaagaaact
gaagtagtttcggaagatgaattacctgaggttcagaaacccagcataaaagatgctgag
aatgtctcagacgatgaacttcccggaccaaaacctgctgaacttcctgctgacaccgag
gtcgtgtcagaggacgaactgccgtcttcgaagaaagaatcaaaggaatcacgtaagcgg
aaaactgaagatgatccagatggctacgaccctggttcaccaacatccgagagtgaatcg
tccaacaagaaacaagctgttgcaaagaatggagagagtaaacctataccagctgagaaa
agaacttcgattgatgaaaaaccaaaaaagaaaacattgcctgagctggacaaatattgg
aaagtagtgaatgatgaccctaccgatttcactggctggacatacttgctgcaatatgtt
gaccaagagagcgacgtggaggcggctcgcgaggcctacgatgcctttctgtcgcactac
ccgtattgttatggttactggaggaaatatgcagactatgagaaacgcaaaggcagtaaa
aagaaatgcctagaagttttggaaagaggcctcaaagccatcccactgtctgtggattta
tggatacactttttaaatcatataaaggcaacgagaacggaagatcatgccttcattcga
tctcaatatgagagggctatagaggcgtgtggtctagagtttcggtcagatcggctgtgg
gagtcgtacatcaagtgggaggctgagaacgggtcagctctgaacgtgacaaatatttac
gaccgcctgttagccacccccacacttggatacacttcacatttcgacaatttccaggag
cacgtgatgtcggagccggtggcgggcgtggtgtcgcgcgcggagctggtgcggctgcgc
ggggaggtgcgggacgccgccggcgccgcgccgcagctcgacctgccgcccggcgaggac
gagccgcttgaccatgtcgcttcggaggaagaagcacaagctataaaagagcgtgtgatt
gctgcgcgtcgcaaagtacacaagactaccggcgaacaggttgccgctcgatggacattc
gaggaaggaataaaacgtccatacttccacgtaaagccacttgaacgttgccagttgaag
aactggaagtcatacttagagtgggagaaacagcatggctcgctgaagagagcgctggtg
ctgcacgagcggtgtctcatcgcttgcgccctctatgaggagttctggatgaggctgatc
aagttcctggaggagcgcgtggaggcgcacccggagctggtggcggtgcagcgcgaggtg
ctggagcgcgcctgcagcgtgcaccacctggacaagcccgagctgcacctgcactgggcg
cacttcgaggaggcgcacggctgccccgcgcgcgccgccgacatcctcgaccgcatcgag
aaggcctgtccctgcctcgtgcagatacagtacaggtgcctccagcctatgcgtgtgaac
ttggaacgtcgtcgcggcgactacgagaagtgcatacagctatacgagggctacatcgcg
tcggcgaagaacaagtcggtggcgtcggcgctgagcataaagtacgcgcgcttcctgttc
cacgtgcggcgctcgcccgcggccgcgcgcgccgcgctggacgccgccgtgctgcgcgac
ccgctcaacccgcgcctgcacgcgcagcgcctcgacctcgcgctgcacacgcccggcacg
ccctacgctgagctcgacgaactggtgtcgtcatacgagcagcaggagggcgcggagcta
gagacgagcgctatgatggcgtggcggcgccgcgagctggcggaggagctgggcgacgcg
gccgcggcccgcgccgcgcatgcgcacgcgcgcgctctcgccaaacacctgcgcaagcgc
gcgcgcaaggacaagcacgacccgccgccgccgccttgcaactcgacagtggattgcacc
aaaaagaaggagtgtactgtggcgacgacgaactgcacgccgacggcgagcagcggcaac
tcgtactaccaggcgccggccgcggcggcctcgtacgagcagtcgtatgcgcagccctac
cagcccgcctggggctaccagcagccgcccgggccctaccagcaccacccgcacccctgg
ccgcagtaccctaactattactag
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