Trichoplusia ni (cabbage looper): 113505432
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Entry
113505432 CDS
T05757
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113505432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tnl03041
]
113505432
03009 Ribosome biogenesis [BR:
tnl03009
]
113505432
Enzymes [BR:
tnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113505432
Spliceosome [BR:
tnl03041
]
Complex A
U2 snRNP components
U2 related factors
113505432
Complex B
113505432
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
113505432
Ribosome biogenesis [BR:
tnl03009
]
Eukaryotic type
90S particles
Helicases
113505432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
AAA_25
T2SSE
AAA_7
Motif
Other DBs
NCBI-GeneID:
113505432
NCBI-ProteinID:
XP_026743902
UniProt:
A0A7E5WUF2
LinkDB
All DBs
Position
26:complement(3305649..3315018)
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AA seq
736 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREEKAAAAAKSGGSGETSDSAIATIGSTMPPTATSTPGVNPFTG
LPHSQRYHELLRRRLGLPVWEYKNDFMRLLNAHQCVVLVGETGSGKTTQIPQWSVEFAAV
TAGKSKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTILKYMTDGM
LLREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKF
QQYFDNAPLMNVPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHICEEISGDILLFLTGQE
EIEDACKRIKREIDNLGPDAGELKCIPLYSTLPPNLQQRIFEPAPPNRANGAIGRKVVVS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK
CFRLYTEKAYKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRAL
ELLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCF
VRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNV
RQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTVKDNQVVQ
LHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKIAPQYYELNNFPQCEARRQL
ELLQARLDSKAYQEGF
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgccgaatcgaagttatggatccatttattaaaaagaaaagagaggagaaa
gcagcagcggctgcgaagtctggtggtagcggagagacatcagactcagcgatcgccacc
attgggagcaccatgccgccaacagccaccagcactcctggtgttaacccattcactggt
ttaccacattcacaacgttaccacgagctgctccggcgtcgcctcggcctccccgtctgg
gaatacaaaaacgacttcatgagactcctcaacgcccaccaatgtgtagtcctcgtcgga
gagacgggctccggtaaaacaacacagataccacaatggtccgtggaatttgctgcagtg
acagccggcaagtcgaaaggagtagcctgtacacaaccgagacgagtagccgccatgtca
gtcgcacaaagagtagcagaggaaatggacgtagcgttgggacagcaagtcggttacagc
atccgtttcgaagactgctccggaccacagaccatcctcaaatacatgacggacggtatg
ttgttaagagaagcaatgtcagaccccatgctagaacaatacagggtgatcctactcgac
gaagctcacgaaaggacgctagccacagacatactcatgggtgtactcaaagaagtgata
aaacagaggtcggacttaaaactagttattatgtcagccaccttagacgcgggcaagttt
caacagtatttcgacaacgcgccgcttatgaacgtccctggtagaacacatcctgtagag
atattctatacgccacaacctgaaagggattatttagaggcagccatccgtactgtcata
caaatacacatttgcgaggaaatatccggtgatatcttactgtttttaacgggacaggaa
gagattgaggacgcttgcaagagaataaagcgagaaattgataatttaggaccggatgcc
ggtgaattgaagtgtataccactgtactccacgttacctcctaaccttcaacaaagaatc
ttcgaaccagcgccgcctaacagagcgaatggtgcaatcggacggaaagtagttgtctcc
acgaatatagctgaaacttccttgactatagacggtgtggtcttcgtcatagacccaggt
tttgcgaaacagaaggtgtataaccctcgtatcagagtggagtcgttgctggtgtctccc
atcagtaaggcgtcggcgcagcagcgggctggacgcgccggacggacgcggccagggaag
tgtttcaggctatacacagagaaagcgtacaaaaatgaaatgcaggacaacacttatccc
gaaatcttaaggtccaacctggggtcggtagtactccaactgaagaaactaggcatcgac
gacctggtgcacttcgacttcatggaccctcccgcgccggagacactcatgagagcgctt
gagctgctcaactacctcgcggctttagatgacgacggcaacctgacggacctgggcgcg
gtcatggcggagttcccgctcgaccctcagctcgccaagatgctgatcgccagctgcaac
cacaactgttccaatgagatcctctcgatcacggctatgctgtcagtcccgcaatgcttc
gtccggccgaacgaggctcgcaaggcggcggacgaggccaagatgaggttcgcgcacatc
gacggagaccatctcacgctgctcaacgtgtaccacgcgttcaaacagaacatggaagac
ccgcactggtgctacgacaacttcatcaactacagatctctcaagtctggggacaacgtg
cgccaacagctcagtaggataatggataggtttaatttaaagagaacaagtacagagttt
acaagcaaggactattacattaatataaggaaagcattagttaatggattcttcatgcag
gtggcccacctggagcgcacgggccactacctgacggtgaaggacaaccaggtggtccag
ctgcacccgtccacctgcctcgaccacaagcccgactgggtcatctacaacgagttcgtg
ctcaccaccaagaactacatccgcacagtcaccgacatcaaaccggaatggctactaaaa
atcgcaccacagtactacgaactaaacaacttcccacaatgcgaggcgcggagacagctg
gagctgctgcaggccaggctcgactccaaagcctaccaggagggcttctag
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