KEGG   Trichoplusia ni (cabbage looper): 113505433
Entry
113505433         CDS       T05757                                 
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    113505433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tnl04121]
    113505433
Enzymes [BR:tnl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     113505433
Ubiquitin system [BR:tnl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    113505433
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     113505433
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_DCAF4 zf-C3HC4 zf-RING_UBOX Beta-prop_EML zf-RING_2 Beta-prop_WDR90_POC16_2nd zf-RING_5 Beta-prop_CAF1B_HIR1 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N RING_XB3-XBAT31 zf-C3HC4_3 WD40_RFWD3 zf-C3HC4_4 Beta-prop_DCAF12 zf-RING_10 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st zf-rbx1 Sina_RING DZR WD40_like DZR_2 TRAF3_RING DUF1272
Other DBs
NCBI-GeneID: 113505433
NCBI-ProteinID: XP_026743903
UniProt: A0A7E5WSV4
LinkDB
Position
26:3563725..3568335
AA seq 766 aa
MSVASASGSASAGGGAPSGGGAASGGGAGGGGAAGVGALGGLGGSLEDKDCDLLCPVCFE
LIDEAYVTRCGHSFCYACISKAVELHRRCPKCGAALASREHIFPNFLLNELVARRRVRAR
AAAPAPRGPSVRALVAAEARRLPLADVDAMLELLTRRKRLLEAECAAAHHRLLYEFLAQL
HRLRAQQLQQLAREAALVRGDMEHVAGVLRDLKAGAAGLARLPDPGPDAAPPGPDAPAGD
AVRALRQELADLADSVGDAAAHTEGGSLVGSEEESFAGGGAGAGDALAARWRRLHAHFDD
FVQCYFAHRADELYFPGSSSATPAPPTFTPAEPCALLGAPPAPPPAPSAPPPASSAAAND
ENHVPLGPTERTPAAHGGDQRAPDELTGDPGPSLGPTPGPTPAPDGSPGPDLGPGSTRSA
SRGRGLDAFREDLLAFTRYRALRPLATLSYCSDAINYSTIVSTIEFDKDEEFFAIAGVTK
RIKVFEYESVVRDCVDVHYPCAEMQCSHKISCVSWNAYHKNVLASSDYEGTVSVWDAGTG
QRSRAMHEHDKRCWSVHFNRADVRLLASGSDDARVKLWALNAERSVATLEARFNVCCVRF
NPRSSCHLAFGSADHCVHYYDLRAPRQPLAVFRDHRKAVSYVKFLDARTLVSASTDSALK
LWRVESPRCVRSFTGHANEKNFVGLATDGRYVACGSENNALYVYYSGLSRPLLAYRFDAV
RGFLERERRDEEPSEFVSAVCWRRAHDTHVLLAANSQGTIKVLELV
NT seq 2301 nt   +upstreamnt  +downstreamnt
atgtctgtcgcgtcggcgagcggtagtgcgagcgcaggcgggggcgcgcccagcggtggg
ggcgcggccagcggcgggggcgcgggcggcgggggcgcggccggcgtgggcgcgctgggc
gggctcggcggctcgctcgaggacaaagactgcgacctgctgtgccccgtgtgcttcgag
ctcatcgacgaggcctacgtgacgcgctgcggccactcgttctgctacgcgtgcatcagc
aaggcggtggaactacaccgccgctgccctaagtgcggcgccgcgctggcctcgcgcgag
cacatcttccccaacttcctgctgaacgagctggtggctcggcggcgggtgcgagcccgg
gccgcggccccggccccgcgcgggcccagcgtgcgcgcgctcgtggcggccgaggcccgc
cgcctgccgctggccgacgtggacgccatgctggagctgctgacgcggcgcaagcggctg
ctggaggccgagtgcgcggccgcccaccaccgcctgctgtacgagttcctggcgcagctg
caccggctgcgcgcgcagcagctgcagcagctggcgcgcgaggcggcgctggtgcgcggc
gacatggagcacgtggcgggcgtgctgcgcgacctgaaggcgggcgcggcggggctggcg
cgcctgcccgaccccgggcccgacgcggccccgcccgggcccgacgcgcccgccggcgac
gccgtgcgcgcgctgcgtcaggagctggccgacctcgccgacagcgtgggcgacgccgcc
gcacacactgaaggcggcagcctggtgggctcggaggaggagagcttcgcggggggcggc
gcgggggcgggggacgctctcgccgcgcgctggaggaggctgcacgcgcacttcgatgac
ttcgtgcagtgctacttcgcccaccgagcagacgagctgtatttccccgggtcgtcgtcg
gccacgcccgcgccgcccaccttcaccccggccgagccctgcgcgctgctgggcgcgccc
cccgcgcccccgcccgcgccctccgcgccccctcctgcgtcctccgccgccgccaacgat
gagaaccacgtaccactggggcccacagagcgcacgccggccgcacacggcggcgaccag
cgcgcgccagacgagctcacaggcgaccccgggcccagcctggggcccacgcctggaccc
acgccggccccggacgggtccccgggccccgacctgggcccaggcagcacccgcagcgcc
agccgcgggcgcgggctggacgccttccgcgaggacctgctggccttcacccgctaccgc
gcgctgcggccgctcgccacgctctcgtactgcagcgacgccatcaactactccaccatc
gtgtccaccatcgagttcgacaaggacgaggagttcttcgccatcgcgggcgtgacgaag
cgcatcaaggtgttcgagtacgagagcgtggtccgcgactgcgtggacgtgcactacccc
tgcgccgagatgcagtgctcgcacaagatctcgtgcgtgtcgtggaacgcgtaccacaag
aacgtgctggcgtcgtcggactacgagggcacggtgagcgtgtgggacgccgggacgggg
cagcggtcccgcgccatgcacgagcacgacaagcgctgctggtccgtgcacttcaaccgc
gcggacgtgcgcctgctggcctcgggctcggacgacgcgcgcgtcaagctgtgggcgctc
aacgccgagcgctccgtggccacgctggaggcccgcttcaacgtgtgttgcgtgcgcttc
aacccgcgctcgtcctgccacctggccttcggctcggccgaccactgcgtgcactactac
gacctgcgcgcgccgcgccagccgctggccgtgttccgcgaccaccgcaaggccgtgtcc
tacgtcaagttcctggacgcgcgcacgctggtgtcggccagcacggactcggccctgaag
ctgtggcgggtggagtcgccgcgctgcgtgcgctccttcacgggccacgccaacgagaag
aacttcgtggggctggccacggacgggcgctacgtggcgtgcggctcggagaacaacgcg
ctgtacgtgtactactcggggctgtcgcggccgctgctggcgtaccgcttcgacgccgtg
cgcggcttcctggagcgcgagcggcgcgacgaggagcccagcgagttcgtgtccgcagtc
tgctggcggcgcgcgcacgacacgcacgtgctgctggccgccaactcgcagggcaccatc
aaggtgctcgagctcgtctga

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