KEGG   Trichoplusia ni (cabbage looper): 113506271
Entry
113506271         CDS       T05757                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113506271
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tnl03041]
    113506271
Spliceosome [BR:tnl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    113506271
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd PRP4 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st MIOS_WD40
Other DBs
NCBI-GeneID: 113506271
NCBI-ProteinID: XP_026744914
UniProt: A0A7E5WWN2
LinkDB
Position
8
AA seq 542 aa
MSDDDDVILVKKSKQVHYGSLEEQEKARLSALAAAAKEGAEDMGGKELGDIQISSEYMEL
EEEMSRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRD
LLSYLGEDAIHKKLEEEEARIERDRGREGTWYHEGPPELREARLWIARYSLPRAKLRLSK
AREELKLAGSVRAAAKQESQRKASAMSIYCSQIGDTRPISYCRFSSDSKMLITASWSGLS
KVWSVPECRGLQVLKGHKCNVSGAAFHPQATMPDHFVTKLKEQAEQETKEDGEAAMETVE
GGDPEGGSEACTMATCAYDGTVHLWNFNSESPLASLEGHSPSRVARVEFHPSGRFLATTV
FDHSWRLWDLETATEVLHQEGHAKAVYSVAFQGDGSLAVTGGMDAFGRVWDLRTGRCVMF
LEGHLGPVLGADWAPQGHQLATAAADHQAKIWDLRRRASVYTIPAHTHLLSSVRYQQSAG
HFLLTSSYDASAALWSLPACHPLRTLQGHDNKVMCADISFDNKYIATCSYDRTFKLWAPD
LA
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgtcggacgacgatgatgtgattcttgtgaagaagtccaagcaagtccattatgggtca
ctggaggagcaggagaaggcgaggctgtcggccctcgcggccgcagccaaggagggagcc
gaagacatgggcgggaaagagctgggagacatacaaatatccagcgaatatatggaactt
gaagaagagatgtccagagataaaaaggctttattagaagagtttgagaggagacggaaa
gctcggcagctaaatgtatccacagatgacgatgaggtgcggcgcagtctccgtcagctg
ggcgagccggtgtgtctcttcggggaggggcctgccgagcgacgcgtgcgactcagagac
ctgctcagctatctcggagaagacgctatacacaagaagttagaagaagaagaggctcgt
atcgagagggaccgcgggcgcgagggcacctggtaccacgaggggccgcccgagctccgg
gaggcgaggctgtggatagcgcgctactcgctgccgagggctaaactccggttgagcaag
gctcgcgaggagctgaagctggctggcagcgtgcgagcagccgccaagcaggagtcacag
aggaaggcctccgccatgtctatatactgcagtcagattggcgacactcgacccatcagc
tattgcaggtttagcagcgacagtaaaatgttgataactgcgagttggtcgggcctgtcc
aaggtgtggtctgtcccggagtgtcgcgggctgcaggtcctcaagggtcacaagtgcaac
gtgagcggcgccgccttccacccacaggccaccatgccggaccactttgtcaccaagcta
aaagaacaggcagagcaagagacgaaggaagatggcgaggcagccatggagacagttgag
gggggggaccctgaggggggctcggaggcctgcaccatggccacctgcgcttatgacggg
actgtgcatctgtggaactttaatagcgaatcccccctggcatcgttggagggccacagc
ccctccagggtcgcccgcgtggagttccacccgtccggcaggttcctggcgaccaccgtc
ttcgaccactcctggagactgtgggatctggagacagcaacggaagttcttcaccaagag
ggtcacgccaaggctgtgtacagcgtagccttccaaggagacgggtctctcgcggtcacc
ggcggtatggacgcgttcgggcgcgtgtgggacctgcgcacggggcgctgcgtcatgttc
ctggaggggcacctggggcccgtgctgggcgccgactgggccccgcagggacaccagctc
gccaccgccgccgctgaccatcaggctaagatttgggacctgaggcgaagagcgtcagta
tacacgatacccgcacacacacacttgttaagctctgtccgctaccagcagagcgcgggc
cacttcctgctgacgagctcgtacgacgcgagcgccgcgctgtggtcgctgcccgcctgc
catccgctgcgcacgctgcagggacacgataacaaggtgatgtgtgcggacatatcgttt
gataacaagtatatagcgacctgctcctatgatcgtaccttcaaactgtgggcgccagat
ctcgcctag

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