KEGG   Trichoplusia ni (cabbage looper): 113506624
Entry
113506624         CDS       T05757                                 
Name
(RefSeq) symplekin-like
  KO
K06100  symplekin
Organism
tnl  Trichoplusia ni (cabbage looper)
Pathway
tnl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tnl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    113506624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tnl03021]
    113506624
   03019 Messenger RNA biogenesis [BR:tnl03019]
    113506624
Transcription machinery [BR:tnl03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     113506624
Messenger RNA biogenesis [BR:tnl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     113506624
    U7-dependent histone pre-mRNA processing factors
     113506624
SSDB
Motif
Pfam: SYMPK_PTA1_N Symplekin_C HEAT_GCN1_2 HEAT_GCN1_C Neuromodulin HEAT_MROH2B_C
Other DBs
NCBI-GeneID: 113506624
NCBI-ProteinID: XP_026745260
UniProt: A0A7E5WWN7
LinkDB
Position
20:complement(<68..7093)
AA seq 1089 aa
MASSKQSFTAAQNQLVQWINEAGMAEGGRRAELLRKVIELLLHQCSSMLPVYVENVLSFV
NDKSTEVRKQVISFIEDLSKQHPDFLPKIIGQLRLLVIDGVIAVQKRAIQASSIIYRNTL
IWICKGTADISDMQLVWENITQLKLLVLNMIDNDNEGIRTHSIKFLEEVVLLQTTSEGSG
DEFSLETLPPNLTFINRRALEEESEHIFKLLVKFHNSQHISSVNLMACMTTLCLLAKFRP
KFMPRVIQALGDLHTTLPPTLSQSQVNSVRKHLKMLLVNLIKHPSSNDMMPQLTQLLIDI
GMTTQEINKAIPKERRNKRLGEIKNGDTPAKRIRIDSPQSNSQGSDSNSNSKADFNAYDD
DSQPPVTSTSQISTEKLVVTEDSLFDGLNNVENVVNLVTSTLVNCLPTEMPSNFISAYKP
IPNSGSKVQKRNLAKMILAVINKEEPVIPQAPTTSLSDLAAKIPLLRDDEEKVTLKNAVA
KLQESTKADRQIESAVSKLMEETRQEHLKEEERKQKDKEKPVPPPTPTVPKLKQKVKLLK
LQEITRPIPKQIKERLIVQAVGRILNAETESIIGGAANIRAKFITIFASSYTPELRDLVL
NYILDDPASRIDLALSWLYEEYAFMQGFNRHPVTLQPKVHEKHDQNYNQLLCALITQICE
RGDPVMDSSKEMLLKRIYSECPVVTDEAVDYLKHLVTEDKVAFLALELLEELCIMRPPRA
HKFVSSLLCHVLNENEEIRDAALKASVKIYKRGTEAVRKVVEKHALLYLGFLSLAQPPPE
LRGARVWTDDLYHVCLTLVMALLAENEELIIEVARVYGSAGSEAKRCVLRGIEAPLRAAA
ARQPAALSPAFSALLDECPRGAETLLTRLVHIFTEKAPPSPELVSKVRELYATRVSDVRF
LIPVLTGLSKREILAALPKLIKQNPMVVKEVFNKLLGLQNPHDENAPVYSVMIFTPAELL
VALHLIDPSKADIMYIIKATALCFAEKQTYTQDVLSAVLQRLSEEPEVPVLMMRTVLQAL
TLYPSMGPLVLNILQLLMEKEVWTNKVVWEGWVKCCLRLAPMSGALLAGLGRRALAAAGG
VPGLLAALR
NT seq 3266 nt   +upstreamnt  +downstreamnt
atggcaagcagtaaacagagttttacggctgctcaaaatcagctcgtacaatggataaac
gaggcgggtatggccgagggaggccgaagggccgaattgttaagaaaagtcatcgaactg
ttgcttcaccagtgctcttcaatgctcccagtgtatgtagaaaacgtattgagcttcgtc
aacgacaaatctaccgaagtcaggaaacaggtcatatcttttattgaagatttaagtaaa
caacacccagacttcttaccaaaaataatagggcagcttcggctattggttattgacggt
gtgattgctgtccaaaagagagccatacaggcatccagtattatttaccgtaacactctc
atatggatatgtaagggtaccgcagatatctcagacatgcagctagtctgggagaacatc
acacaactgaagttgctagtcctaaacatgatagacaatgataacgaaggtattaggacc
cactcaatcaagttcttggaggaggtagtgttactgcagacaaccagtgaaggctctgga
gatgagttcagcctggagacactgcctccaaacctcactttcatcaatcgacgggcttta
gaagaagaatctgagcacattttcaaattgctagtaaaatttcacaactcccaacacata
tctagcgtgaacttgatggcttgtatgacgacactgtgcctactcgctaagttcagacca
aagttcatgccccgagtcatacaagcgttaggcgacttgcacacaacactgccaccaaca
ctatctcagtcacaggtcaattcagtgaggaaacacctgaaaatgctccttgtgaatctc
ataaagcatccgtcatcgaatgacatgatgccgcaattgacgcagctgctgatagatata
gggatgacgacacaggagattaataaggctatacctaaagagaggaggaataaacgattg
ggcgaaatcaagaatggtgacacccctgcaaagaggattaggatagattctcctcagtcg
aacagccagggaagtgatagcaacagcaacagtaaggcagactttaacgcgtatgatgat
gacagtcaacccccagtaacatcaaccagccaaataagtacagaaaagttggtagtaacg
gaagactcgctgttcgacggtcttaacaatgttgaaaatgttgttaaccttgtaacaagc
acactggtcaactgtctacccactgaaatgccttctaacttcataagtgcctacaaaccc
atccctaactcgggcagcaaggtacagaagaggaatctagccaaaatgattctggctgtc
atcaataaagaagagcctgtaataccacaagcaccaactacctccttatctgacttggct
gcgaaaatacctttactgagagatgatgaagaaaaagtgaccctgaaaaatgctgtagct
aagttacaagagtctaccaaagccgatagacagattgaaagcgcagtatcgaagcttatg
gaggaaacgagacaggaacacttgaaggaagaggagagaaaacaaaaggacaaagagaaa
cctgtccctccgccaacacccactgtaccaaagttaaaacagaaggtgaagctactaaaa
ctgcaggaaatcactcgtcccatccccaaacagattaaagaaaggttgatagtgcaagca
gttggaaggatactcaacgcggaaacagaaagcattatcggtggagctgcaaacatacgt
gcaaagttcataacaatattcgcatcaagttacacaccagaattgagggatttggtcctt
aattacatattagacgaccccgcgagcaggatcgacttagctctatcatggttgtacgaa
gagtacgctttcatgcaaggttttaaccgtcacccagttaccttacagcccaaagtccat
gagaaacacgatcagaattacaatcagttgctctgtgcattgatcactcagatttgtgag
agaggtgatccggtcatggatagttctaaggagatgttgttaaaaaggatttattcagag
tgtccagttgttactgatgaggcagtcgattacttgaagcatttggtgacggaggataag
gtggcgtttttagctctagagttgttggaggagctgtgtattatgaggccaccgagggcg
cataagtttgtgtcgtcgttgctttgtcatgtgttgaatgaaaacgaggaaatccgcgat
gctgccctgaaagcttcggtgaagatctacaagcgcggtacggaggcggtccgcaaggtg
gtggagaagcacgcgctgctgtacctgggcttcctgtcgctggcgcagccgccgcccgag
ctgcgcggggcccgcgtctggaccgacgacctctaccacgtctgtctcactctcgtcatg
gcgctgctcgctgagaatgaagagttgataatcgaggtggctcgtgtgtacggtagcgcg
gggtcggaggccaagcgctgcgtgttgcgcggcatcgaggccccgctgcgggcggcggcc
gcgcgccagcccgccgcgctcagccccgccttcagcgcgctgctggacgagtgtccgcgc
ggggccgagaccctgctcaccaggctcgtacatatattcactgagaaagcgcccccttcg
ccggagttggtgtctaaagtgcgggagttgtacgctacgcgggtgtcggacgtgcggttc
ctgataccggtactcacgggcctgtctaagagagagattttggccgcactaccaaagctt
atcaaacaaaacccaatggttgtaaaggaagtcttcaacaagctgctaggcctccagaat
ccacacgatgaaaatgcaccagtgtatagtgttatgattttcactccggccgagctcttg
gtggctttgcatcttatagacccgagtaaggcggatatcatgtacattatcaaggccacg
gcgctgtgcttcgcagagaaacagacgtatacacaagatgtactatcagcagtattacaa
aggttatcagaggagccagaagtccccgttctgatgatgcggacggtgttgcaagcttta
acactatatccctctatggggcctctcgtactcaatatactgcagctgcttatggagaaa
gaggtttggacgaacaaagtagtgtgggagggctgggtgaagtgctgcctgcggctggcg
cctatgtcgggcgcgctgctggcggggctggggcggcgcgcgctggcggcggcgggcggc
gtgcccggcctgctggcggccctgcg

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