Trichoplusia ni (cabbage looper): 113508908
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Entry
113508908 CDS
T05757
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113508908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113508908
03036 Chromosome and associated proteins [BR:
tnl03036
]
113508908
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113508908
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
113508908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
113508908
NCBI-ProteinID:
XP_026747879
UniProt:
A0A7E5X573
LinkDB
All DBs
Position
3:complement(3267022..3323405)
Genome browser
AA seq
1869 aa
AA seq
DB search
MFQKPAFGTTTSNFGSFNAGTTAASPFGGFKPATGTSAFGAPPAFGAAASTQPATGGGLF
GATNTSGGLFGGSTASTSSGGFGASTSGFAFGATQPASGGLFGNTSTVGGGLFGATHNQN
AFGAKPTGFGFGNTSAAGASTSGLFGAAQPASGLFGQQAPALGGGGLFSTNTAGGFGQQQ
AAPGTAHVKYNPVVGTDVVVKSGTSQSVNIKHHCITCMKEYETKSLEELRLEDYAAGRKG
NSGGMFGGFQQQQTENKPLFGSTTFGQPATTSAAPVFGGGSLGGSAFGQQNTSFSFPTSS
QNTTTTGLFGANKPAFGVAPTTGTGLFGATTTQSTTFGTNTSSFGFGSNTQNMQQQSTGI
FGAKPATTGFGATPASTGFGGFGNTGVFGAKTQAPAFGTQAPAFGSLAGGFGTNTSTSTG
LFGGNTTFGKPQTTTQPFGFNNQQTGLGTGLGTGLGASTFQTKPGAAPFPALGGSNMFQQ
PAQNNTFKTGLDSGLGGGLFNNTNSLGGSVLGLGGMNANNSALNNSLGSSAAGNVHEQIL
TLAARPYGDSPLFKDLLPDSATTADDVLKPTNPAAVKAVLESAGSAAYRVSSPAAHRLSL
TPRATLTHDKKSLFDGLEESDASLEDKLSLKPSRKRLVLRPNHSANDTHHDVTDHAHDNS
SYGQGNKRSMEEPQQNGAEREQAAEQANIDEVDRRQDDFISLKNAGRQADTSSDRHGSWL
SSSKLPWNDKEQPIDDEPTPRLYPNLEKDIQTQVSERRASWLTTKPLRKPLISNPDSAEN
SVRELGVRPDRSQDKENVDTLSMSEEENVSPRAAPPHPAGVKLTRPGYYTIPSLDEMTAF
IRPDGSCVVPHLTIGRKNYGNVYYDCEIDVAGMDLDSLVHFLNKEVIVYPEESEKPPLGE
GLNRRAIVTLDRVWPRDKTEKRPITDPDRLMKMEYESKLRRVCDKHATKFIEYRPASGSW
VFRVEHFSKYGLTDSDDEDDVPDLLRRQLVTAEVQKAAVLAPAPPAPPGLGGLGGAGQAA
GLGGLGPASALVPEDNLFAMQQTSLNLLNGAAKAFEMDTTEDNNESQSLYMDNRAFGVKS
PTSELARLEHRQSHNVQLMKASLYADTEMEDDASVSTGDQLVPVSAPLLAAPALQPPPAL
LQQEPPAEADAPDTEEVPMKPLIVRPHTIVLKYHRKVPPFKQTIAGRLDAAPISDLSVCR
ARHSRVGWAPGATLAFTTALNTLQDLPNSAELSDLGKYVAGRGPADWSEPVLVRMALGEA
QKDDGMQDMLRLHLETLLQYSEFSSAEDCAQLSMAGAASSRRAALQGYLRHAKASASGAY
FYEVWRLCDALWGADLDNDGVPGTDQLSVVNRHRKLLEWLKSAVSEATDEDLSKPRLGEP
EDEADGHSARVWTLLLGGRILEACKVAKEHGDLNMATLIAQAAGDPTFRSLITRQLSLWR
ECGADTLMSSHRWATLQLISGQSSPPPDKLTDTDWLRALHATARYLCPHVPSLEQVLRTY
EGFFTPGSEREDSELDLSAVEADQMGMRLPLPPYVANYDLNMETNGQKRRVLDLRYELLR
ARAFNTRPKLRPAAYTPDPMDYSLCFLLGAWLGRPCAEAVLGAAHQLQAAGDWHLAVLVL
AYHPDSQARGHLIRDVLSRHAPAKADTPDLKSRLELIRRLRVPENWLLLAQAHRAKYEHQ
PALEASYLVGAGHYNAAHRVLLDDLMPRAVLADDLQSIAPLLERMNEAAQRHEVSGWESG
GQALHHYLHVCDEILGLASCSDAAGVAARLEALRPRVAAAARALGALQPKSAAGRFARAE
MGARLVQCTLAAGEAGARLAALLRALRLPPGTTHAAHSSISSLLAERAAESCSISSPNSP
PAPQRAAAS
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaaaccagcattcggtacaaccacgtccaattttggatcattcaacgccggt
acaacagcagcctcaccgttcggcggtttcaagccggcgactggcacgagtgcattcggc
gcaccgccggctttcggcgccgcggcttccacgcaacccgctactggcggaggtctcttc
ggcgctacgaatacgtcgggaggtcttttcggcgggagtactgcgtctacatcgtccggc
ggattcggcgctagcacttcaggcttcgcgttcggcgccactcagccggccagtggaggt
ctctttggtaacacatcgactgtcggcggaggactgttcggcgccactcacaaccaaaat
gctttcggcgctaaacctacaggcttcgggttcggcaacacgtctgcggcgggcgcgagc
acgagcgggctgttcggcgcggcgcagcccgcctccggcctgttcggacagcaggcgccc
gctctcggcggggggggactcttctccaccaacactgcgggcggcttcggccagcagcag
gcggccccgggcacggcccacgtgaagtacaacccggtggtgggcacggacgtggtggtc
aagtccgggacctcgcagagcgtcaacatcaagcatcactgtatcacctgcatgaaggaa
tacgagaccaagtcattagaagagcttcgcctcgaagactacgcggcgggccgcaagggg
aacagcggcggcatgttcggcggctttcaacaacagcagaccgaaaacaaaccgctgttc
ggatccacaacgttcgggcagcccgccacgactagcgcggcccctgtgttcggcgggggc
tcgctgggcggctcggccttcgggcagcagaacacgtccttctcgttccccaccagctcg
cagaacaccaccaccacgggactcttcggtgccaataaacctgccttcggtgttgctcct
accaccggtactggtttattcggagcgactaccactcaatcaacaacatttggaacgaat
acgtcgtctttcggatttggatctaacacacagaatatgcagcaacagtcgacgggtata
ttcggcgccaagccggcgacgacgggcttcggcgcgacgccggccagtaccgggttcggc
gggttcggcaacaccggcgtgttcggcgccaagacgcaggcgcccgccttcgggacacag
gcacccgccttcggttccctcgctggcggcttcggcaccaacacatcgacgtcgacgggc
ctgttcggtggtaataccacttttggaaagccccagacaaccacacaaccatttgggttc
aacaaccagcagactggacttggtacaggtctaggtacgggtctgggcgccagtaccttc
cagaccaagccgggggcggcgcccttcccggcgctgggcggcagcaacatgttccaacag
cccgcgcagaacaacacctttaagactggtctggacagcggtctgggcggcgggctgttc
aacaacaccaactctctgggcggttccgtgctcggcttgggcggaatgaatgctaacaat
agtgcactcaacaacagtcttggctcttcagctgccggcaatgttcatgaacagatatta
actttagccgctcgaccctacggtgattcacctctgttcaaggacttactaccggattct
gcgacgacggcagacgatgtcctgaagccgacgaaccccgcggcggtgaaggcggtcctg
gagagcgcgggcagcgccgcctaccgcgtgagctcgcccgccgcgcaccgcctcagcctc
acgcccagggccacgctcacgcacgacaagaaatccctattcgatggcttagaagaatcg
gacgctagtctcgaagacaagttatcattgaaaccgagtcgcaaacgtttggtgttgcga
ccgaaccacagcgcgaacgacactcaccacgatgtcaccgaccacgctcacgacaacagc
tcttatggacaagggaataagagatctatggaagaaccgcaacagaacggtgcggagaga
gagcaagccgcggaacaagctaacatagacgaggtcgacaggagacaagacgacttcata
tcgttgaagaatgctggaagacaggccgacaccagttcggacaggcacggcagttggtta
agctcatcaaaactaccttggaacgacaaggaacaacctatagatgatgaaccgacgccg
cgtctgtaccctaacctagagaaagatattcaaacgcaagtgtcggagagacgtgctagt
tggttaacaacgaaacctcttcggaaaccgttgatttcgaacccggactcggctgagaac
tcggtgcgggaactcggcgtccgaccggacaggtctcaagataaggagaacgtcgatact
ctatctatgtcagaggaagagaacgtgtctccccgggcggctcccccgcaccccgccggt
gtgaagctcacccgccccggctactacaccatacccagtctggacgagatgaccgccttt
atccgtccggacgggtcgtgcgtcgtcccgcacctgaccatcggccgcaagaactacggc
aacgtgtactacgactgcgagatcgatgtcgccggcatggatctagatagtctagtccac
ttcttgaacaaggaggtgatagtctaccctgaggagtcggagaagcctcccctcggcgag
ggtctgaaccggcgcgcgatagtcaccttagacagggtgtggccgcgcgacaagactgag
aaacgacctattactgatccagacagactcatgaagatggaatacgagagcaaactccgt
cgcgtgtgcgacaagcacgcgaccaagttcatcgagtaccggccggccagcggcagctgg
gtgttccgcgtcgagcacttcagcaagtacgggctcaccgactccgacgacgaggacgac
gtgcccgacctgctgcggaggcagctggtcaccgctgaggtccagaaggctgcggttcta
gcccccgcgccgcccgcgccccccgggctgggcgggctgggcggggccggccaggccgcg
gggctgggcggcctgggccccgcctcggcgctagtccccgaagacaacctcttcgccatg
cagcagacgtccttgaacctactcaatggagcagctaaagctttcgaaatggacacgacg
gaggacaacaacgaatcgcagagcctctacatggataatagagcgttcggcgtcaagagc
ccgacgagtgaactagctcgtttagaacatcgacagagccataatgtgcaactgatgaag
gcttcactatatgctgatacagaaatggaagacgacgcgtcagtgtcgacgggcgaccag
ttggtcccggtgtcggccccgctgctggccgcgcccgccctgcagccgccgcccgccctg
ctgcagcaagaaccgcccgctgaagcagacgcaccagacactgaagaagtaccaatgaag
cctttaatagttcggccgcacaccatagtgttgaagtaccacagaaaagtgccgcctttc
aaacagactatagctggccgtctagacgcagctcccatatcggacctctctgtctgccgc
gcgagacactctcgtgtgggctgggcgcccggtgctaccctagctttcactacagctctc
aacactctacaagatctgcctaattcggcagagctctcagatctaggcaagtatgtagcg
ggcaggggtcccgctgactggtcggagccggtgttagtcagaatggctctcggcgaagct
cagaaggatgacggcatgcaggacatgctacgcctgcacctggagaccttgctgcagtat
tcagagttctcctccgcggaggactgcgcccagctcagcatggcgggagccgccagcagc
cgccgcgcggccctgcaggggtacctgcgacatgccaaggccagtgcgtcgggcgcctat
ttctatgaggtttggcggctgtgcgacgcgctgtggggagccgatctcgataacgatggt
gtacccggcacagatcagctctcagtggtgaacaggcataggaaacttctagagtggctc
aaaagcgccgtatccgaagcgacagatgaagatctatcgaaaccgagacttggcgagccg
gaagacgaagcggacggtcacagcgctcgcgtctggaccctactcctcggtggaagaata
ctagaagcctgtaaagtggccaaggaacatggtgacctcaatatggccactctaatagca
caggctgctggtgatccaacattccgttcgctgataacacgtcagctctccctctggcga
gaatgcggagcggacaccctgatgtcctcccaccgctgggcaaccctacagctcatctct
gggcaaagctcgccgcccccggacaaactcaccgatacagactggttgagagcattgcat
gctactgctagatacctgtgtcctcacgtaccgtcattggagcaggttctccgcacttac
gagggtttcttcactcccggctccgagcgcgaagactcagagttggacctgtccgctgtg
gaggcagaccaaatgggcatgcgactgccgctgccgccgtacgtggcgaactacgacctc
aacatggagacgaacggccaaaaacgccgcgtgttggacttgcgttacgagttactgaga
gcgcgcgcgttcaacacgcgcccgaagttgcggccggcggcgtacacgccagaccccatg
gattacagtctgtgtttcctgctgggcgcgtggctagggcggccctgcgcggaggcagtg
ctgggcgccgcccaccagctgcaggccgccggggactggcatctcgccgtactcgtgttg
gcataccatcccgatagccaagctcgaggccacctcatccgcgacgtgctatctcgtcac
gcgccagccaaagctgacacgccagatttgaagtctagactagaactgattagaagactg
agggtcccggagaactggctgctgctggcgcaggctcatcgggccaagtatgagcaccag
ccggccctagaagcttcttacttggttggcgcgggacactacaacgcggcacaccgcgta
ctgctggatgacctcatgcccagagctgtgttagccgatgatctacaaagcatagcgccc
ttactcgagcgtatgaacgaagccgcccaaagacacgaggtcagcggctgggagagcggc
ggacaggcgttacatcactatctacacgtctgtgatgagatcctgggcctagcgtcgtgt
tcagacgcggcgggcgtggcggcgcgcctggaggcgctgcggccgcgggtcgccgccgcc
gctagggccctgggggccttacaacctaagagcgcagccgggcgcttcgcccgcgcggag
atgggcgcgcgactagtacagtgcacgctggcggccggagaggccggcgcccgcctcgcc
gcgctgctgagggcgctgcgcctgccgcccggcaccacgcacgccgcgcactcctcgata
agttcactactagcagagcgagcggccgagtcttgcagtatctcatcaccaaactcacca
ccagccccacaacgagccgccgccagctaa
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