Trichoplusia ni (cabbage looper): 113508922
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Entry
113508922 CDS
T05757
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113508922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnl03019
]
113508922
Messenger RNA biogenesis [BR:
tnl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
113508922
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
113508922
NCBI-ProteinID:
XP_026747903
UniProt:
A0A7E5X3X5
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Position
3:complement(3497787..3500723)
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AA seq
227 aa
AA seq
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MAAVQGAPGNKQWPARPGLQHQNSQGPAPSVTLNRTINLYPLTNYTFGTKEPLFEKDASV
PARFQRMREEFSKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIEG
LKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQ
DRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFVYM
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtacaaggcgctccaggcaataaacagtggccggcaagacccggtcttcag
catcagaatagccaaggcccagcgcctagcgtaacattgaataggacaataaacttatat
cctcttactaattacacttttgggacaaaggagcctctattcgagaaggatgcgtcagtt
cccgccaggtttcagaggatgcgggaggagttttcgaaaatcggaatgaggaggtcagtg
gaaggagttctcctagtacatgaacatggtctacctcatgtgctgttgctacagctcggg
acagcattcttcaagctgcccggaggagagctcaaccctggagaggatgagattgagggt
ttgaagaggctcctgacggagaccctcggcagacaggacggtgttaagcaggagtggctc
atcgaggatactataggtaactggtggcgtccaaacttcgagccgccccaatatccctac
ataccgccacacatcacgaaaccaaaagagcacaagcgccttttcttagttcaattacaa
gacagagccttattcgcagtgcccaagaactacaaactggttgctgcacctctcttcgaa
ttgtatgataatgctcagggttatggccccatcatctcatcgttatcacagagcctctgt
cggttcaactttgtgtatatgtga
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