Trichoplusia ni (cabbage looper): 113509042
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Entry
113509042 CDS
T05757
Name
(RefSeq) probable histone-binding protein Caf1
KO
K10752
histone-binding protein RBBP4
Organism
tnl
Trichoplusia ni (cabbage looper)
Pathway
tnl03082
ATP-dependent chromatin remodeling
tnl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tnl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113509042
03083 Polycomb repressive complex
113509042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tnl03036
]
113509042
Chromosome and associated proteins [BR:
tnl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
113509042
Histone modification proteins
HAT complexes
HATB complex
113509042
HDAC complexes
Sin3A-HDAC complex
113509042
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
113509042
PRC2.2
113509042
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
113509042
Heterochromatin formation proteins
Other heterochromatin formation proteins
113509042
Chromatin remodeling factors
NuRD complex
113509042
NuRF complex
113509042
NuRF complex (fruit fly)
113509042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_WDHD1_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_RFWD3
ANAPC4_WD40
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
Beta-prop_SPT8
MIOS_WD40
NBCH_WD40
Beta-prop_DCAF4
YqbF
Motif
Other DBs
NCBI-GeneID:
113509042
NCBI-ProteinID:
XP_026748106
UniProt:
A0A7E5X604
LinkDB
All DBs
Position
1:4506147..4513098
Genome browser
AA seq
432 aa
AA seq
DB search
MGDKGDGETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEG
KDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIDIE
IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQK
EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEGRVIEAKSVFTGHTAVVEDVAWHLL
HESLFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV
ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQTAED
AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPA
SELESGVNVNHG
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgggtgataaaggagacggagaaaccttcgatgatgcggtcgaggagagggttatcaat
gaggagtacaagatatggaagaagaatactccttttttatacgatctggtgatgacacac
gctcttgagtggccgtcgttaactgcccagtggcttccagacgtgaccaggcctgaaggg
aaggattactcggttcacaggttaattttgggtacacacacatcagatgagcagaatcac
ctattgatagccagtgttcagctccctaatgaagacgcacagtttgatgccagccactat
gacaatgataaaggagaatttggaggtttcggctcagtatctggcaaaattgacatagag
attaagatcaaccatgagggagaagtgaacagggctcgctacatgccacagaacccctgt
gttattgccaccaagacaccatcatccgatgtgctggtgtttgactacactaaacatcca
tcaaagcctgaaccatctggtgaatgccatcctgacctcagattgcgaggtcatcaaaaa
gaaggatatggtttatcctggaaccctaatcttaatggctacctactatcagccagtgat
gaccacacaatatgtctgtgggacataaacgcgactcctaaggagggtcgcgtgatcgag
gctaagtctgtgtttacgggacacaccgccgtcgtggaggacgtcgcgtggcatctactg
cacgagtcactcttcggctccgtcgctgatgaccagaaactcatgatctgggacaccaga
tgtaacaacacgtcaaaaccgtctcacacagtggacgcgcacacggcggaggtcaactgt
ctcagcttcaacccttactctgagttcatactggccaccggcagtgctgacaaaacggta
gcgttatgggacctgcggaacctgaagctgaagctgcactcgttcgagtcgcacaaggac
gagatcttccaggtgcagtggtcgccgcacaacgagaccatcctcgccagcagcggcacc
gacaggaggcttcacgtgtgggacctgtcgaagataggcgaggagcagacggcggaagac
gcagaagacggtccccccgagctgctgttcatccacggaggacacaccgccaagatctcc
gacttctcctggaaccccaacgagccctgggtcatctgctccgtgtccgaggataacatc
atgcaggtatggcagatggcggagaacatctacaacgacgaggagcccgagacgccggcg
tccgagctggagtccggcgtcaacgtcaaccacgggtag
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