Thalassotalea nanhaiensis: RI845_02345
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Entry
RI845_02345 CDS
T10168
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tnn Thalassotalea nanhaiensis
Pathway
tnn03020
RNA polymerase
Brite
Enzymes [BR:
tnn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RI845_02345 (rpoC)
Transcription machinery [BR:
tnn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RI845_02345 (rpoC)
DNA repair and recombination proteins [BR:
tnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RI845_02345 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNC69002
LinkDB
All DBs
Position
490755..494966
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLERSQILTEEEYLDSLEEHGDEFDAKM
GAEAVLALLKEIDLNGEIDQMREELPEIGSETKRKKITKRLKLMEAFAQSGNKPEWMIMS
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGGEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNVLSPANGDPIIVPSQDVVLGLYYLTRDCVNGKGEGMVFTSVKEAEKAYRTE
VAELHARVKIRITEVVNGEDVVSMIDTTIGRALLWMVCPKGLPYELINKPLGKKQISTLI
NHAYRNLGLKDTVMFADHIMYTGFHYAMIAGASVGIDDMVIPDAKYTIIEAAEEEVTEIQ
EQFDSGLVTAGEKYNKVIDIWSSANEKVSKAMMDNLSKESILNRDGEMEEQDSFNSIFMM
ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD
TALKTANSGYLTRRLVDVAQDLVVTEQDCGIEEGLLMTPLIEGGDVVEPLRERVLGRVVA
QDVLIPGTEDVLFARNSLLDEADCDTLEEHSVDQVWVRSIITCDTDFGICALCYGRDLAR
GHLINEGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNTGTLKLQNAKF
VTNSEKKLVITSRSSELTVIDELGREKERYKVPYGSILNKADGEDIAAGETIANWDPHTH
PIITEVGGKIQFVDLIDAVTMTRQTDELTGLSSIVITDPAQRGTAGKEMRPMVKLVDKKG
NDVMIAGTEIPAQYFLPGNAIVNLEDGAEVNIGDALARIPQESSKTRDITGGLPRVADLF
EARKPKEPAILAEKTGIIGFGKETKGKRRLLITQPSGEVYEEMIPKWRQLNVFEGESVLK
GEVIADGPESPHDILRLRGIDHVANYIVNEVQDVYRLQGVKINDKHIEVIVRQMIRKCEI
MTAGDSNFLPGEQVEVARVKIANRELEAQGKEPAEFQTLMLGITKASLATESFISAASFQ
ETTRVLTEAAVAGKKDDLRGLKENVIVGRLIPAGTGYAYHKNRMNKANAVEEETTVSAED
AEQALTDALNADMLGGFAPSGDE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaactgaagaattcgatggtatt
cgaattggcctagcgtcaccagacatgatccgttcatggtcatttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaaaccagagcgtgacggccttttctgtgcccgt
attttcggaccagtgaaagattacgaatgtttatgtggcaagtacaagcgccttaagcat
cgtggtgttatatgtgaaaaatgtggtgttgaagtaacgctaactaaagttcgtcgtgac
cgtatgggccacattgaactagctagccctgttgctcacatctggttcttaaaatcattg
ccatctcgtatcggtttattacttgatatgacattgcgtgatattgaacgcgtattatat
tttgaatcttatgttgttaccgaacctggtatgacaacattagagcgtagccaaatttta
accgaagaagagtatcttgattctcttgaagaacacggtgatgaatttgacgcgaaaatg
ggtgctgaagcagttttagccctattaaaagaaattgaccttaacggcgaaattgatcaa
atgcgtgaagaactacctgaaattggtagtgaaactaagcgtaagaaaatcactaaacgt
cttaagttaatggaagcattcgctcaatctggtaacaagccagaatggatgattatgtcg
gttcttccgatccttccaccagatctacgtccactagttccactagatggcggtcgtttt
gcaacgtctgatctgaacgatttatatcgtcgtgttattaaccgtaacaaccgtcttaaa
cgtctactagatttagtagcaccagacattatcgtacgtaacgaaaagcgtatgttacaa
gagtctgttgatgcgttattagataacggtcgtcgtggtcgcgctattaccggttctaac
aaacgtcctcttaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aacttacttggtaaacgtgtagattactctggtcgttctgtaatcacggttggtccaaca
ctacgtttacaccaatgtggtcttcctaagaagatggcattagaattatttaagcctttc
atctacggtaaattagaagctcgtggtcttgcgactacaattaaagcggctaagaaacta
gttgaacgtgaaggtggtgaagtttgggatgtacttgatgaagtaatccgtgaacatccg
gttatgcttaaccgtgcaccaacgcttcatagacttggtatccaagcgttcgaacctgta
cttatcgaaggtaaagcaatccatttacacccactagtttgtgcggcatacaatgccgat
ttcgatggtgaccaaatggcggtacacgttcctttaacaatcgaagctcaattagaagct
cgtgcgttaatgatgtctaccaataacgtattatcaccagctaacggcgacccaatcatc
gttccttcacaggatgttgtattaggtctttactacttaacacgtgattgtgttaacggt
aaaggtgaaggtatggttttcacttctgttaaagaagctgaaaaagcttaccgtactgaa
gttgcagaattacacgctcgcgtgaaaattcgtatcactgaagttgtaaatggtgaagat
gttgtatctatgattgatacaactattggtcgtgcgcttttatggatggtatgtcctaaa
ggtttaccatacgagcttattaataagccgttaggtaaaaagcaaatttctacgctgatt
aaccatgcgtaccgtaaccttggtcttaaagacacggttatgtttgccgatcacatcatg
tacaccggtttccactacgcgatgatcgcgggtgcttctgttggtatcgacgatatggta
attccagatgcgaaatacactatcatcgaagctgctgaagaagaagttactgaaattcaa
gagcaatttgactctggtctagtaacagctggtgagaaatacaacaaagttatcgatatc
tggtcatctgcgaacgaaaaagtttcgaaagcgatgatggacaacttatcaaaagaatca
atcttaaaccgcgacggtgagatggaagagcaagactcattcaactctatcttcatgatg
gctgactctggtgctcgtggtagtgccgctcagattcgtcagttggccggtatgcgtggt
ctaatggctaagccagatggttcaatcatcgaaacgccaatcacagcgaacttccgtgaa
ggtttgaacgtattacaatacttcatctctactcacggtgcgcgtaaaggtttggccgat
acggcacttaaaacagctaactcgggttacttaactcgtcgtctagttgatgtagcacaa
gatttagttgtaactgaacaagactgtggtatcgaagaaggtctattaatgactccactt
atcgaaggtggtgatgttgtagaacctctacgtgaacgtgttcttggtcgtgtagtagca
caagatgtattaattccaggtactgaagacgtgctattcgctcgtaacagtctacttgat
gaagcagattgtgacacgctagaagaacactctgtggatcaagtttgggtacgctcaatt
attacttgtgatactgactttggtatttgtgcattatgttacggtcgtgacttggcacgt
ggtcaccttatcaacgaaggtgaagcaatcggtgttgtggcagcacaatcaatcggtgag
ccaggtacacagttaacgatgcgtacgttccacattggtggtgctgcatcgcgtgcatct
gctgaaaacagcgtacaagttaaaaatactggtactcttaagcttcaaaacgctaagttt
gtaactaactcagagaagaaactagtaatcacatcacgttcatcagaacttactgttatt
gatgaattaggtcgtgaaaaagaacgttataaagttccttacggttcaatcttgaataaa
gcagacggcgaagatatcgcagctggcgaaactatcgctaactgggacccgcatacgcat
ccaatcattactgaggttggtggtaagattcaattcgttgaccttatcgatgctgtaacc
atgacgcgtcaaactgatgaactaacaggtttatcaagtatcgttatcactgaccctgca
cagcgcggtacagcgggtaaagaaatgcgcccaatggttaagttagtagataagaaaggt
aatgatgtaatgatcgctggtactgaaattccagcacaatatttcttacctggtaacgca
atcgttaaccttgaagatggtgcggaagttaatatcggtgatgcgttagcacgtatccca
caagagtcatcaaaaactcgtgatattaccggtggtcttccacgtgttgctgacttgttt
gaagcgcgtaagcctaaagagcctgcaattcttgctgagaaaacaggtatcattggtttc
ggtaaagaaactaaaggtaagcgtcgtttactaatcactcaaccaagtggtgaagtatac
gaagagatgatccctaaatggcgtcaacttaacgtgttcgaaggtgaatctgttcttaaa
ggtgaagttatcgccgatggtccagagtctccacacgatatcttacgtttacgtggtatt
gaccatgttgctaactacattgttaacgaagtacaagatgtataccgtttacaaggtgtt
aaaatcaacgataagcacatcgaagtaattgttcgtcagatgatccgtaagtgtgagatc
atgacagctggtgacagtaacttcttacctggtgagcaagttgaagtagcacgcgttaaa
attgctaaccgtgaattggaagcgcaaggtaaagaaccagctgagttccaaactctaatg
ctaggtattactaaagcatcgcttgcaacagaatcatttatttctgctgcatcgttccaa
gaaacaactcgtgtacttactgaagctgctgttgcaggtaagaaagatgacttacgtggc
ctgaaagaaaacgtaattgttggtcgtctaattcctgccggtactggttatgcgtatcat
aagaaccgcatgaacaaagctaatgctgttgaagaagaaacgacagtttctgctgaagac
gcagaacaagcactaactgatgcattaaatgcagacatgttaggcggttttgctccaagc
ggtgacgaataa
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