Thalassotalea nanhaiensis: RI845_06570
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Entry
RI845_06570 CDS
T10168
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tnn Thalassotalea nanhaiensis
Pathway
tnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI845_06570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnn03019
]
RI845_06570
Enzymes [BR:
tnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RI845_06570
Messenger RNA biogenesis [BR:
tnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RI845_06570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Terminase_3
UvrD-helicase
SecA_DEAD
P-loop_SecA
Cas3-like_C_2
MRP-S22
Motif
Other DBs
NCBI-ProteinID:
WNC69799
LinkDB
All DBs
Position
1472468..1473769
Genome browser
AA seq
433 aa
AA seq
DB search
MSFDTIGLPDDLLNAVKACGYKSMTPIQQRAIPAVRAGQDVLASAQTGTGKTAAFALPII
EQLLKHKASTVPVVRALILTPTRELAKQVAENIREYTQFTDLKTAVVFGGVDSAGQIKNL
KAGADILVATPGRLQELLDARNVSLTQVKFAVLDEADRMLDMGFVKDIESILQTIKHQHQ
TLLFSATFSNKVKLLTKQFLTNPRVLETAKQNATAAKIRHYVYPVVEERKSEMLAELIGV
NNWQQVMVFAGTKESANQIAKELKLDGIKAALCHGDRSQGSRNKALEDFAEGKVRVLVAT
DVAARGIDIEDLQYVVNYHLPFLPEDYIHRIGRTGRAGKSGTAISFVSPKDNKFLGNIEE
VLGHKIEQVKLPGYDFDPLDYASKAEKKAAASNTGSKNRYQAQQDKNRSVAKKRTDIGRP
KAKVKRKSRYSSK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgatactattggcttaccagatgatttattaaatgcggtaaaagcatgcggc
tacaaaagcatgacgccaattcaacagcgagcaattcctgcagttcgtgccggacaagat
gtcttagcgagtgcacaaactggcacaggtaaaactgcggcattcgcgttgccaattatt
gaacagcttttgaagcacaaagcatcaacagtgcctgtagttcgagcattaattttaacg
ccaacgcgcgagttggctaagcaagttgccgagaatattcgcgagtacactcaatttact
gatttaaaaactgcagtagtatttggcggtgtcgactcagctgggcagatcaaaaactta
aaagctggcgctgatatattggtggctacgccaggtcgtttgcaagagctcctagatgca
cgcaatgttagtcttacgcaagtgaagttcgccgtgttagacgaagctgaccgtatgctg
gatatgggctttgtaaaagatattgaatcaatcttacagaccattaagcatcaacaccaa
acgttgctattttcagcaacattttcaaataaagtaaaactacttaccaagcagttttta
acgaaccctagagtattagaaacggcaaagcaaaatgctaccgccgcaaaaattcgtcat
tacgtttaccctgttgtagaagaacgtaagagtgaaatgttggccgagctaataggcgta
aataactggcagcaggttatggtttttgcgggcacaaaagaaagtgccaatcaaattgct
aaagagcttaaacttgacggcataaaagcggctctttgtcatggcgatagatcgcaaggc
tctcgtaacaaagctttggaagactttgccgaaggtaaagttagagtacttgtagcaact
gatgttgccgcacgtggcattgatattgaagatttacagtatgtagttaactatcactta
ccatttttaccagaagattatatacaccgcattggccgtacgggtagagcaggtaagtcg
ggcactgcaatttcatttgtttcaccaaaagataataagtttttaggtaatattgaagaa
gttcttggtcataaaattgagcaggttaaacttccaggttatgattttgaccctttagac
tatgcgtctaaagcagagaaaaaagcggcagcaagtaataccggtagtaaaaaccgctat
caggcgcagcaagataagaatcgaagtgtcgctaaaaagcgtaccgatataggtagacct
aaggctaaggtgaagcgtaagagccgttactcatcaaagtaa
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