Thalassotalea nanhaiensis: RI845_07730
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Entry
RI845_07730 CDS
T10168
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tnn Thalassotalea nanhaiensis
Pathway
tnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI845_07730 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnn03019
]
RI845_07730 (rne)
03009 Ribosome biogenesis [BR:
tnn03009
]
RI845_07730 (rne)
Enzymes [BR:
tnn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RI845_07730 (rne)
Messenger RNA biogenesis [BR:
tnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RI845_07730 (rne)
Ribosome biogenesis [BR:
tnn03009
]
Prokaryotic type
rRNA processing factors
RI845_07730 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
HC2
Motif
Other DBs
NCBI-ProteinID:
WNC70017
UniProt:
A0ABY9TMP8
LinkDB
All DBs
Position
complement(1747631..1750639)
Genome browser
AA seq
1002 aa
AA seq
DB search
MKRMLINATQSEEFRVALVDGQNLYDLDIESPGHEQKKSNIYKGTITRVEPSLEAAFVDY
GADRHGFLPMKEIARSYFPQGYSFQGRPNIKDVLREGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKDSLSKLDLPKGMGLIVRTAGVGKAYDEL
EWDLNVLLQHWSAISEAAASRPAPFLIHQESNVILRAIRDYLRRDIGEIVIDRPKIFDSV
KQHIQLVRPDFLSKVKLYKGDVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVRPDRARIQLSRISKFGLLEMSRQRLRPSIGETSQGVCPRCSGTGNVRGVESLAL
SILRLMEEEAIKDKTSQVHAQVPVPVATYLLNEKRNAVGHIEKSHDVKVLILANSDMDTP
QYEVVRVRDDETMAEASYEMKLNTTAPEEAVMPKFQKETVKRDEPVLQGMSAPTKPTSNA
PVKQKAKQPHKKVDNKESTGLIASVLGFFKSLFTTEEKAPEKKPTHGKRKPHDNRDRRNR
KPRNQQRRGKGQGQDRERDQKDNRNQKDNRNVKDKDQKAGQPKKQQPKKQQDRQQDKQAA
KPKEAKVAERRQRRNTRKKVRVQDQNEQVTNKQTTAPAEAVNKAAVKAEPATQNVVTNDV
QTEATGGESKDKEQRVRNRRSPRHLRSHGQRRRKEKLDTTEAEIENTIVDERTTEDPVVA
RYPSVTEEVQTTLDLETPADFVEPAVVTKEEDVTVDEEDKVNEQQQDLPLAEEVVTEEVV
TEEVVTEEVVTEEVVTEQVVTEEVVTEEVVTEEVVAEEVVAEEVVAEEVVAEEVVAEEVT
ADEVVAEEVVTEEVIAKPAKAKAAKAKPAKAKTAKAKPAIIAKGKAHAPMTKPAAVEVGE
QTIPTASLTVAERAQVARSNRSATSAFATSKSSAGPTKPSAQ
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttaatcaatgctacacaatcggaagaattccgcgtagcactagttgac
ggccagaacctttacgatttagatatcgaaagccctggtcatgaacaaaaaaaatcgaac
atctacaaaggtacaatcactcgagttgaaccatctttagaagcagcttttgttgactat
ggcgcagatcgccatggtttcttaccaatgaaagagattgctcgtagttactttccgcaa
ggttacagtttccaaggtcgcccaaacataaaagatgttttgcgtgaaggccaagaagta
attgttcaaattgataaagaagaacgcggccaaaaaggcgcagcacttactacatttatc
tctttagcaggtagctacttagtgttaatgcctaataatcctcgcgcaggtggcatatct
cgtcgcatcgaaggtgatgaacgaacagagctaaaagactcattaagtaaattagactta
ccaaaaggcatgggcttaattgtacgtactgccggtgtaggtaaagcctatgatgaactt
gagtgggatttaaatgttctacttcaacattggtctgcaatttcagaagcagcggcttct
cgtccggcaccatttttaattcaccaagaatctaacgttattttacgtgccattcgcgac
tatttacgtcgtgatataggtgagattgttattgaccgcccgaaaattttcgacagtgtt
aagcaacatatccaattagtgcgccctgactttttaagtaaagtaaaactatataaaggt
gatgtgcctttatttactcattaccaaatagaatcacaaattgaatctgcattccaacgt
gaagtgcgtttaccgtctggtggctctattgtaattgacccaacagaagcattaacatca
attgatatcaactctgcccgtgcaacaaaaggcagtgatattgaagaaacagcctttaat
actaaccttgaagctgcagaagaaattgctcgtcaattacgtcttcgagatttaggtggt
ttagtagtaattgatttcatcgatatgacgcctgttcgtcatcagcgtgaagttgaaaat
cgcatgcgtgacgcagttcgcccagatagagctcgaattcagctaagccgaatttctaaa
tttggtttattagaaatgtcacgccaacgtttacgtccttcaattggtgaaacaagccaa
ggtgtttgtccacgttgtagtggtactggtaatgtacgcggtgttgaatcgttagcatta
tcaattttgcgtttaatggaagaagaagccattaaagacaaaacttcacaagttcatgct
caagtacctgtaccggtagcaacttacttgctaaatgaaaaacgtaacgctgttggccat
attgaaaagagccacgatgttaaagtattaattttagcaaatagtgacatggacacgcca
cagtacgaggttgtgcgtgtgcgtgatgatgaaactatggctgaagcaagttatgaaatg
aaacttaacactacagcgcctgaagaagctgtaatgcctaagttccaaaaagaaacagtt
aagcgtgatgaacctgttttacaaggcatgtcggcaccaacaaagccaacttctaatgcg
cctgttaaacaaaaagctaaacagcctcataagaaagtagacaataaagagtctacgggc
ttgatcgcttccgttcttggattctttaagtctttatttactaccgaagaaaaagcacct
gagaaaaagccgacacacggtaagagaaagcctcatgataaccgtgaccgtcgcaatcgt
aagccacgtaatcaacaacgtcgtggtaaaggccaaggtcaagaccgtgagcgcgatcaa
aaagataatcgcaaccagaaagataaccgcaacgtaaaagacaaagatcagaaagctggc
cagcctaaaaagcaacagcctaaaaagcagcaagatcgtcaacaagacaaacaagcagcg
aagcctaaagaagctaaagtggcagagcgtcgtcaacgtcgtaacactcgtaagaaagta
cgagtgcaagatcaaaacgagcaagttacaaataagcaaactacagcacctgctgaagca
gtaaataaagctgcagttaaggctgagcctgctacacaaaatgttgtgactaacgatgta
cagactgaagcgactggcggtgaaagcaaggataaggaacagcgcgtaagaaaccgtcgc
tcgccaagacacttgcgctcacacggccaacgtcgacgtaaagagaagttggatacaact
gaagcagaaattgaaaatacaattgttgatgaaagaacaactgaagatccagtggttgct
cgctaccctagcgttactgaagaagtacaaacgactttggaccttgaaactccagctgat
tttgttgaacctgcagtcgtaacaaaagaagaagatgttactgttgacgaggaagataaa
gtcaatgaacagcaacaggacttgcctctagctgaagaagtagttactgaagaagtggtt
actgaagaagtggttactgaagaagtggttactgaagaagtggttactgaacaagtggtt
actgaagaagtggttactgaagaagtagttactgaagaagtggttgctgaagaagtggtt
gctgaagaagtggttgctgaagaagtggttgctgaagaagtggttgctgaagaagtgact
gctgatgaagtggttgctgaagaagtcgttactgaagaagtgattgctaaacctgcaaaa
gctaaagctgcgaaggcaaaacctgcaaaggctaaaacagcaaaagcaaagcctgcgatt
attgctaaaggcaaagcgcatgcgccaatgacgaaacctgcggcagttgaagttggggaa
caaactattccgacagcttcattaaccgttgccgagagagctcaagtggctcgctcgaat
agatcagcaacctcggcatttgctactagcaaaagttcagcaggaccaactaagcctagc
gctcagtaa
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