Thalassotalea nanhaiensis: RI845_12060
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Entry
RI845_12060 CDS
T10168
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tnn Thalassotalea nanhaiensis
Pathway
tnn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RI845_12060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnn03400
]
RI845_12060 (mfd)
Enzymes [BR:
tnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RI845_12060 (mfd)
DNA repair and recombination proteins [BR:
tnn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RI845_12060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
UB2H
Helicase_C_2
Glyco_tran_WecG
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WNC67252
LinkDB
All DBs
Position
2773596..2777123
Genome browser
AA seq
1175 aa
AA seq
DB search
MSQTSSIFSPLLALSKVDATLKDKKQWANLHGSSASVAIYFAAANSNSLTLLITEDTATA
LKLEHELLSINDQDLDICLFPDWETLPYDSFSPHQDIISQRLQTLYRLSRMRKGIVIVPA
HTLVHRIAPKQYIEANSLLIKTGDKKDLHQMRTELEASGYRAVDQVLEHGEFSARGAILD
LYPMGNNTPYRLDFFDDEIDSIRTFDVEDQRSKDTIANIELLPAHEFPTDKAAIELFRSQ
YREILKANNDKDSVYHHVSKNILPAGIEYYLPLFFEQTATLFEYLPINTQVLIHGDIDKN
LEQFNLDAQYRYEDRRYDPLRPLLPPDKLFLTREQLFATLKQHDRVNIKVADKESQAIKL
NDKAGNVNYATAALPSVAVNHQLKQPLQNVCQFLESAAQNNQQVLFVAESQGRRETLLEL
LSREQITPKNVDDLSSFISSELPIAITVNALNHGFIVSQTDIKTDLNFAVITEDDLFTDR
VKQARRRTKQQETNSEAIFKNLTELSLNQPVVHIEHGIGRYQGLQTFENQGISTEFLMLS
YANDAKLYVPVASLHLISRYSGSNSDTTPIHKLGTDSWSKAKKKAAEKIKDVAADLLDIY
AKRAQSHGYAFKRNKEEYISFSESFGFEETLDQQNAITNVIADMLDHKTMDRLVCGDVGF
GKTEVAMRAAFVAANDSKQVVVLVPTTLLAQQHYENFRDRFANWPINIEVLSRFKTSKQQ
KEVISEIATGNIDILIGTHKLLSDDIKFKDLGLLIVDEEHRFGVKQKEKIKKLRANVDIL
TLTATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERENGLIRESVLREVLRGGQV
YFLHNNVQTIEKTAQELQDLLPEAKIIVAHGQMRERELERIMSDFYHQRYNVLVCTTIIE
TGIDIPTANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAIKRLDA
ISQLEDLGAGFALATHDLEIRGAGELLGEDQSGQMASIGFSLYMEMLDQAVAALKEGKQP
SLEDLTAKQTEIELRVPALIPDDYIYDVSMRLSFYKRIASCKDNQELDEIQIELIDRFGL
LPQATKHIFFIAKLRLTAEDIGISRIDAGINGGSIEFNSSTKIDPMLIIGLIQQQPSIYK
MDGANKLKFAIKTEDNQARFTLINKMLDSLNKSIA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaaccagtagtatattttcgcctttattagcgttaagtaaagttgatgccact
ttaaaagataaaaaacaatgggctaacttgcacggttccagtgccagtgttgctatttat
tttgccgcggctaactctaacagtcttactttattaattaccgaagatacagcaaccgcg
cttaagcttgaacatgaattacttagcattaatgatcaagacttggatatctgcttattt
cccgattgggaaactctaccgtacgatagcttttcgcctcatcaagatattatttcacaa
cgactacaaacgctttatcgcttatcacgaatgcgtaaaggcattgtcattgttccggcc
cataccttagtacatcgcatagcgccaaaacagtatattgaagcaaacagtttactgata
aaaacaggcgataaaaaagatttacatcaaatgcgtacagaattagaggccagtggttat
agagctgttgaccaagttcttgaacatggtgaatttagtgctcgcggcgctattctagat
ctttaccctatgggtaataatacgccctatcgtttagacttttttgatgatgaaatagac
agcattcgaacctttgatgttgaagatcaacgttcaaaagataccatcgccaacattgaa
ttattgccagctcatgaatttccaactgataaggcggcaatagaattatttagaagccaa
tatcgtgaaatattaaaagcgaataacgataaagattcggtatatcatcatgtcagtaaa
aatattttaccggcaggtatcgaatattatttaccgctattttttgaacaaacagcaacc
ttatttgaatacttgccaatcaatacacaagtattaattcacggtgatattgataaaaac
cttgaacaattcaacctggacgctcagtaccgctatgaagatagacgttacgatccgtta
aggccgttactgccaccagataagttgtttttaactcgagaacaattgtttgcgacatta
aagcaacatgatcgagtgaatataaaggtagccgataaagaaagccaagcaattaagctc
aatgataaagctgggaatgtaaactatgccactgcagcgttacccagcgttgcggttaac
catcaacttaaacagcctttacaaaatgtttgtcagtttctagaaagtgcagcacaaaac
aaccagcaagtgttatttgtcgctgaaagccaaggccgaagagagactcttttagagtta
ctttcccgagaacaaataacgccaaaaaatgttgatgatctaagcagcttcatttcatca
gagttgccaattgcaattacggttaatgcacttaaccacggttttattgtttctcaaaca
gacatcaaaaccgatcttaattttgccgtaatcactgaagatgatttattcactgaccga
gtaaagcaagccagacgcagaactaaacaacaagaaaccaacagtgaagcaatatttaaa
aacctgactgagctgtcgttaaatcaaccggttgtacatatcgagcatggtattggccgc
tatcaaggcttacagacctttgaaaaccaagggatcagcactgaatttttaatgttaagt
tatgctaatgacgccaagctttatgtgccagttgcctcattacatttaatttctcgctat
tcaggctcaaacagcgatacaacaccaattcataaattaggcaccgactcttggtcaaaa
gcgaagaaaaaagccgcagagaaaattaaagatgtagccgctgacctactcgatatttat
gcaaaacgagcacaaagtcatggctatgcatttaaacgaaataaagaagagtacataagt
ttttcagaaagctttggctttgaagaaactcttgatcaacaaaatgccattaccaatgtt
atagctgacatgctggatcacaaaaccatggaccgtctggtttgtggtgatgttggcttt
ggtaaaactgaagttgccatgcgagcagcctttgttgccgccaatgactcaaaacaagtt
gtggtgttagtcccaactaccctgctggcacaacaacattatgagaattttcgtgatcgg
tttgcaaattggccaataaatattgaagtactgtcacgttttaaaacatctaagcagcaa
aaggaagtgattagtgaaatcgctaccggtaacattgatattcttataggcactcataaa
ttattgtctgatgacattaaatttaaagacttaggattacttattgttgatgaagagcat
cgctttggcgtaaaacaaaaagagaaaatcaaaaaactgcgtgccaatgttgatatcttg
acccttaccgcaacacctattcctagaacactaaatatggctatgggaggaatgcgagat
ttatcaataattgcaacacctccggcaaagcgattagccgtaaaaacctttgtacgtgaa
cgtgaaaacggcttgatcagagagtctgtattacgtgaagtgttgcgtggtggtcaagta
tacttcctgcataacaatgttcaaaccattgaaaaaacagctcaagaacttcaagacttg
ctgccagaagcaaaaattattgttgctcacggtcaaatgcgtgaacgcgaactagaacgt
attatgagtgatttttatcatcaacgttataatgtattagtgtgtaccactattattgaa
acgggcatcgatattcctactgcaaacaccattattatggacagagccgatcatttaggt
ttagcacagttacaccaattgcgtggtcgtgttgggcgttcgcatcatcaagcgtatgct
tatttattaacgccccaccctaagcgtatgaccaaagatgcaattaagcgcctagatgcg
atatcacaactagaagatttaggtgcaggttttgcgttggcgacacatgacttggaaatt
cgtggtgcgggtgagttgttaggcgaagaccagtcagggcaaatggccagtattggtttc
agcttatacatggaaatgcttgatcaggcagtggcggcattaaaagaaggtaaacaacct
tcgctagaagatttaaccgctaagcaaactgaaattgaattgcgtgtacccgcgttaata
cctgatgattacatttatgatgtcagcatgcgtttatcattttataaacgtatcgccagc
tgtaaagacaaccaggagctggatgaaattcaaattgaattaattgaccgttttggttta
ttaccgcaagcaactaaacacatattttttatcgccaaattacgcttaaccgctgaagac
atcggaatatcaagaattgatgcaggtataaatggtggttcaatcgaatttaatagcagc
actaaaattgatcctatgcttataataggcttaatccagcaacaaccatcaatttataaa
atggatggtgcgaataaactaaaatttgcaattaaaactgaagataatcaagcccgcttt
accttaatcaacaagatgctagacagtttaaacaaaagtattgcctaa
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