Thalassotalea nanhaiensis: RI845_15985
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Entry
RI845_15985 CDS
T10168
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tnn Thalassotalea nanhaiensis
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tnn03016
]
RI845_15985
Enzymes [BR:
tnn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RI845_15985
Transfer RNA biogenesis [BR:
tnn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RI845_15985
Prokaryotic type
tRNA splicing ligases
RI845_15985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
MPI_cupin_dom
Motif
Other DBs
NCBI-ProteinID:
WNC68011
UniProt:
A0ABY9TGS9
LinkDB
All DBs
Position
complement(3679154..3680275)
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AA seq
373 aa
AA seq
DB search
MNKSKASYRHWMSERLTPELQQQTQRLLHAKDVKHVRLMADAHLANDVCVGCVLATEKLI
YPAAIGGDIGCGMLSVPLGVDADFIQSQQAEVIFKNLTHLVPIVKQAQGIPFELDRKLSN
ERLQHIALRDGCYQLGTLGRGNHFLELQRCVDTEQLWLMIHTGSRGMGPAIRDYHLHHSS
GKSASLKYLDIESEQGLAYFNDLCWAREYANANRLKILERCTALFHDLFSISVDESKMIH
CDHNHLDLITVNKQDLLIHRKGACSVTKGEAAIIPGSMGSDSFHVVGKGNADSLFSSSHG
AGRCMSRQLARKTITSNNLSKQLSGIYYQQEKLRLLTEEAPTSYKNIEKVMSLQKKLVKV
TRRLSPVLSYKGT
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatcaaaagcaagttatcgacattggatgagcgaaagattaacgccagaatta
cagcagcaaacacaacgtttattacatgcaaaagacgttaaacatgtacgtttaatggct
gacgctcatttagccaacgacgtatgtgtgggttgtgtattagcaacagaaaaattgata
tatccggctgcaattggcggtgatatagggtgtggcatgttatcagtgccattaggagtt
gatgcggactttattcaaagccagcaggccgaagtgattttcaaaaacttaactcacttg
gttcctatagtgaaacaggctcaaggcataccctttgaattagacagaaaattatctaat
gaaaggctgcaacatatagccttacgagatgggtgttatcagttgggtacgctaggtcgc
ggtaatcattttctggagctgcaacgatgtgttgatacagaacaactatggttaatgata
catacaggatctcgcggtatggggcctgctattcgagactatcatttacatcattcatct
ggaaaatcggctagccttaagtacttggatattgaaagtgaacaaggactggcttacttc
aatgatctttgttgggctcgagaatatgctaatgcaaacagactgaaaattttggagcga
tgtacagctctgttccatgacttattttcaatctcggtagatgaaagtaagatgattcat
tgtgatcataaccatcttgatttgatcacagtaaacaaacaggacctgctaattcaccgt
aaaggagcatgctcagtaacgaaaggtgaagcagctatcatcccaggaagcatgggaagt
gacagcttccatgtcgtaggaaaaggaaatgctgattctcttttttctagttctcatggt
gctggtcgatgtatgagcaggcaattggctaggaaaacaattactagtaataatttaagc
aaacaactttctggtatttattatcaacaggagaagctacgcttgttgactgaagaagct
cctacaagctataaaaatattgaaaaggtaatgtcgttgcagaagaagctagtcaaagtt
actcgacgtttaagtcctgtcttgagttataagggaacttag
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