Thalassotalea nanhaiensis: RI845_16720
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Entry
RI845_16720 CDS
T10168
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tnn Thalassotalea nanhaiensis
Pathway
tnn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RI845_16720 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnn03019
]
RI845_16720 (rnr)
03016 Transfer RNA biogenesis [BR:
tnn03016
]
RI845_16720 (rnr)
Enzymes [BR:
tnn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RI845_16720 (rnr)
Messenger RNA biogenesis [BR:
tnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RI845_16720 (rnr)
Transfer RNA biogenesis [BR:
tnn03016
]
Prokaryotic type
tRNA degradation factors
RI845_16720 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
WHD_RNase_R
CSD
Motif
Other DBs
NCBI-ProteinID:
WNC68156
UniProt:
A0ABY9THI2
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All DBs
Position
complement(3842988..3845384)
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AA seq
798 aa
AA seq
DB search
MKHKDPHHQRESAKYDNPVASREFLLSLLEQKGHPMTFVQVCKELGYKDEDQKVGVKRRL
RAMENAGQLVFTKFKQYAIASKSSVITGVVIGHRDGFGFLKPDEGDKDLYIPYHEMRKLI
HGDVVEARVTESSDAKGRQEVRILDILQPRKDKIIGRIFVEKSVITVIPEDARISHEIII
PSDKRLGARQGQMVIVDIIQRPTKRTTPLGKITEVLGEHMAPGMEIQVALHQHDLPHSWS
EELLKEISSLTPEVDEDAKKGRIDLRELPLVTIDGEDARDFDDAVYCRPEKDGGWRLWVA
IADVSYYVRPGTALDGEAIKRGNSVYFPNQVIPMLPEVLSNGLCSLNPDVDRLCMVSEMS
ISANGKLQDAKFYPAVMNSHARFTYTKVAAILEGDVDLREQYKERVGDLEELHRLYHSLV
VARRGRGAIEFETEEVRFIFNADRKIDSVEPVIRNDAHKIIEECMILANVATAEFVTKHE
KPGLYRVHDKPNEEKYNNLVKYLAELGIELTKKDEPTSADFGEIIEKVADRPDHELIQTM
LLRSMKQAVYQCENLGHFGLALPAYSHFTSPIRRYPDLVIHRVIKAILENQENSTVNAGF
YEYDQQEASELGEHCSMTERRADDATREVSDWLKCEFMQDHVGDTFTGVIATVTNFGFFV
RLQDFHIEGLVHISSLGKDYYSHDEVRMCLVGENSKKKYHVGDILEVQVAAVNLEEKKID
LILGGESSVTDLNKKQKKKVKSTQYKAENKTKSKAGERKPFEPGKSKSKTKDKGKSKAGK
RQKAKGRPGKNARKKAKS
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcataaagacccccaccatcaacgtgaatcagccaaatacgataaccctgtggcc
agtcgtgaatttcttttatctttgttagagcaaaaaggtcatccgatgacgtttgtgcaa
gtttgcaaagagcttggttataaagatgaagatcaaaaggttggtgttaaacgacgttta
cgagcaatggaaaatgctggtcaactggtatttactaaatttaaacagtatgcaattgct
agtaaatcatcggtaattaccggtgtggtgatcggtcatcgtgacggctttggattttta
aaaccggacgaaggtgataaagacttatatattccttatcatgaaatgcgaaaactgatt
catggcgacgttgttgaagcaagagtgacggaaagctctgatgcaaaagggcgtcaagaa
gttcgaattctagatattttacagccgcgtaaagataaaattatcggacgaatttttgtt
gaaaaatcggtaattactgttattcctgaagatgctcgtattagtcatgagataattatc
ccaagtgacaaacgtttaggtgcgcgacaagggcaaatggtgattgttgatatcattcaa
cgtccaaccaaacgaacaacccctttaggcaaaattacggaagtacttggtgagcatatg
gcgccgggtatggaaatacaggttgctttacatcaacacgatttaccccattcatggtct
gaagagctattaaaagaaattagttcacttacccctgaagtagatgaagacgccaaaaaa
gggcgtatagatttgcgtgaactaccattggttaccattgatggtgaagacgcccgtgat
tttgatgatgcagtgtattgtcgtccagagaaagatggtggttggcgtttatgggtagca
attgccgatgttagttattatgttcgccctggtactgcattggatggtgaggcgattaaa
cgtggtaactcggtttatttccctaatcaagttattcctatgctgccagaagtattatca
aatgggttatgttcattaaaccctgacgttgaccgtttgtgtatggtttcagaaatgagc
attagcgcaaatggtaaattacaggatgctaaattttatccggcagtaatgaattctcat
gcgcgttttacttacaccaaagtagcagccattttagaaggtgatgttgaccttcgagag
caatataaagaacgtgttggcgatcttgaagaattgcatcgtttatatcatagcttagtt
gttgccagacgtggtcgtggtgccattgagtttgaaactgaagaagtccgttttattttt
aatgccgatagaaaaattgattctgttgagcctgttattcgaaatgatgcccataaaatc
attgaagaatgtatgattttggccaatgttgctactgcagagtttgttactaaacatgaa
aaaccgggtttgtatcgtgtacatgataaacccaatgaagagaaatataacaatttagtg
aagtaccttgccgaacttggtattgaattaaccaaaaaagatgagccaacctctgccgat
tttggcgaaattatagagaaagttgctgatagacctgatcatgaattgatccaaaccatg
ctattacgttcaatgaaacaagcggtatatcaatgtgagaatttagggcactttggttta
gcgctgccagcatattctcactttacgtcacctattagacgttatcctgatttagtcatt
catcgggtaattaaagcgatattagaaaaccaggaaaacagtactgttaatgccggtttc
tatgaatatgaccagcaagaagcctctgagttgggtgaacactgttcaatgacagaacgc
cgtgcagacgatgccacccgtgaagtatctgattggctaaaatgtgaatttatgcaagac
catgttggtgatacgttcactggtgttattgcgacagttaccaattttggtttctttgtt
cgtttgcaagattttcatattgaaggtttagtgcatattagttcgcttggtaaagattat
tattctcacgatgaagtgcgcatgtgcttggtcggtgaaaattcgaaaaagaaatatcac
gttggtgatattcttgaagtacaagttgctgccgttaaccttgaggaaaagaaaatagat
ctcatcctaggaggtgaaagctctgttactgacttgaacaaaaagcaaaaaaagaaagtt
aaaagtactcaatataaagctgaaaacaaaactaaaagcaaagctggtgagcgaaagcca
ttcgaaccgggcaaaagtaagagtaaaacaaaagataaaggcaaatctaaagcaggaaag
aggcaaaaagccaaaggccgcccaggtaaaaacgctcgtaaaaaagcaaaaagctag
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