Thalassotalea nanhaiensis: RI845_16880
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Entry
RI845_16880 CDS
T10168
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tnn Thalassotalea nanhaiensis
Brite
KEGG Orthology (KO) [BR:
tnn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnn03019
]
RI845_16880 (hrpB)
Enzymes [BR:
tnn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RI845_16880 (hrpB)
Messenger RNA biogenesis [BR:
tnn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RI845_16880 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
HA2_C
ResIII
Cas3-like_C_2
AAA_22
RoxA-like_Cyt-c
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WNC68188
LinkDB
All DBs
Position
complement(3874964..3877513)
Genome browser
AA seq
849 aa
AA seq
DB search
MNTVLPIQTVKSPMLTALETYPAIILSAPPGAGKSTQLPLWLLEADLFKQKKIIMLQPRR
IAAKSVANRLAGQLDENVGETVGYRMRNDTKVSKHTRLEVVTEGILTRLIQADNELADVG
LIIFDEFHERSIHADLAFALALDIQQGLRDDLQLLLMSATLDNDYLARFLPDAKVLGCEG
RSFPIEVSYQAPNIERNWRQHAISVIRQHTVNEVGSILVFLPGTADIRFIYNALIEQLPA
DVDLFALYGDLDIKQQQQAINPAISGRRKLVLATNIAETSLTIDGISMVIDSGYEKVARF
NHDSLINELTMQKISKASAIQRAGRAGRVQAGKCIRLYANDDFQRRSEHAASEISQADLL
PLTIDVANWGVSQFKQLSFLELPVNSREQQNWQSLQALDIVDSKNRLTKHGQLVANFPCH
PRFAHMMIKALDVVADNTHAKHCLSLACILAAMLEERDIFNRDRANEHCDIQARLYQLSN
SSKNKPTGIEYRIIKQAQSLAKKLNNISATKFSLSVNENDWPMEFCGLLLAFAYPERIAM
ARKSLGSYLCANGKGAELANNDKLNGEPYLVCAKLHSYQQKLQITLASTIEEQYIYQYFN
SHIATIDVLNYDDKQQKISSEKQTRLFNLTLKQERTKTAINSETLTALWCDFIRQKGLSV
LKFNNYTENFITRVRWLNSYCSELNLPDFSEQGLTDALEAWLAPYVFDVKKLSALQKLDF
KEILNNSLDFEQQNLVKQWAPKSYTSPVGREFTYQYSEQPQPKLALPMQQVYGLSSSPYV
ANGQVAVLLELLSPAKRPIQVTQDLARFWQGSYKDVQKDMKANYPKHFWPDDPANAQATT
KLKKHLTNK
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagtattaccgattcaaaccgtaaaatctccaatgctaacggcactagaaact
tatccggctatcatattgtctgctccgcccggagcaggcaaatcaacgcaactgccttta
tggctattagaagctgatttattcaaacagaaaaaaatcattatgctgcaaccgcgccgc
attgcagctaaatcagtggcaaatcggttggctggacaactagatgagaacgttggagaa
actgtagggtatcgtatgcgtaatgataccaaggtatctaaacatactcggttagaagtg
gtgaccgaaggtatactgactcgactcattcaagctgataatgaacttgctgatgttggc
ttgattatttttgatgagtttcatgaacgctcaattcatgctgatttagcctttgcctta
gcattagatattcaacaaggtcttcgtgacgatttacagctgttgttaatgtctgccacg
ttagataatgactacctcgctcgatttttacctgatgctaaagtacttggttgtgaaggc
cgcagttttccaattgaagtgagctatcaagcgccaaatattgaacgtaattggcgccaa
catgcaataagtgtaatacgtcaacatactgtcaatgaagtcggctctattttagttttc
ttgccaggcactgcagatattcgctttatttacaatgccttaattgaacagctacctgcc
gatgtcgatttgtttgccttgtatggcgacttagatattaagcaacaacaacaagcaatt
aatccggcaatatctgggcggcgaaaattggtgttggcaaccaatattgccgaaacgtcg
ttaaccatagatggtatttcaatggtgattgatagcggttatgaaaaggtcgcacgcttt
aatcatgacagtttaattaatgaattaacgatgcaaaaaattagcaaagcatcggcaata
cagcgagcgggccgagcgggtcgtgtacaagcgggcaaatgtatacgactatatgcaaat
gatgattttcaacgccgatctgaacacgcagccagtgagataagccaagcggatttatta
ccattaaccatagatgtggcgaattggggggtaagtcaatttaaacaattgagctttctt
gaattgccggttaattcgcgagagcaacaaaactggcaatcgttgcaagcgctggacatc
gtcgatagcaaaaataggttaacgaaacatgggcaattggtggcgaattttccttgccac
ccaaggtttgcccatatgatgattaaagcattagatgtcgttgcagataatactcacgct
aagcactgcttatcgctggcgtgtatattggcagcgatgcttgaagagcgtgatattttc
aaccgcgacagagctaatgaacactgtgatattcaagctcgcttatatcaactttctaat
agcagcaaaaataagccgacaggcattgaatatcgcattattaaacaagcacaaagcctg
gctaaaaagttgaacaatattagcgcaactaagttttcattgagtgtaaatgagaacgac
tggcccatggagttctgtggattattactcgcgtttgcctatcctgagcgaatagcgatg
gctcgaaaatccttaggcagttatttgtgtgctaatggcaaaggcgctgagttagctaat
aatgataaattaaatggtgaaccgtacctagtgtgtgccaagctgcatagctatcaacag
aagttacaaatcacattagcttcaacaattgaagaacagtatatttatcagtattttaat
tcgcatattgctactattgatgtgctgaattatgatgataaacaacaaaaaatttccagt
gaaaaacaaacccgtctatttaacttaacgctcaaacaagagcggacaaaaacggcgata
aatagcgaaacgttaactgcattatggtgcgactttattcgtcaaaaaggtttgtccgta
ttaaaatttaataactacaccgaaaacttcattacccgcgtacgctggcttaacagctat
tgcagtgagctgaatctgcctgacttttctgagcaaggcttaacagatgcattagaagca
tggcttgctccttatgtgtttgatgtaaagaagttatcggcattgcaaaaacttgatttt
aaagaaatattgaataattcattagattttgaacagcaaaatttagttaaacaatgggca
cctaaaagctacactagcccggtaggcagagaattcacttatcagtatagtgaacaacct
cagccaaagttggctttacctatgcaacaagtgtatggtttaagtagctcaccctatgtt
gctaatgggcaagttgcggtattattagaattactctccccggctaaaaggccaatacag
gtaacgcaagacttagcaaggttttggcagggtagctacaaggatgtgcaaaaagatatg
aaagccaactacccgaaacatttttggcctgacgatccggctaatgcgcaagcaacaaca
aaattgaaaaagcatttaaccaataaataa
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