Thermotoga petrophila RKU-10: Tnap_0241
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Entry
Tnap_0241 CDS
T01139
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tnp
Thermotoga petrophila RKU-10
Pathway
tnp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tnp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tnap_0241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tnp03021
]
Tnap_0241
03400 DNA repair and recombination proteins [BR:
tnp03400
]
Tnap_0241
Enzymes [BR:
tnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tnap_0241
Transcription machinery [BR:
tnp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tnap_0241
DNA repair and recombination proteins [BR:
tnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tnap_0241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ADA66346
UniProt:
D2C5W0
LinkDB
All DBs
Position
236471..241543
Genome browser
AA seq
1690 aa
AA seq
DB search
MPMSSFKRKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKD
YECACGKYKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTL
LNMSTSDLENIIYYGSRRVIERAFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFEVEQAF
VVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVLPGMILIVKDGQEVE
KGQDLTKEMTIDPVYAPFDGHVEIDELSNTITLKPLTTSKDQPVVFTAPYGAKILVSNGQ
KVKKGDQITTSTSLPSVKSSISGTVRFGSNLNIRALEDGNFEVLSTGEVYVEQVIEERKY
PVFEGALVYVNNGDQVKKGDHLADRFLFEEEYLSATEYKIFESHYPTMFDVEERTENDRP
IVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEAL
QAEIEAELKKLPSSSSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIE
GGRFATTDLNELYRRLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGK
RSRRAVLKDRNGRPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHQCGIP
KKMAMELFKPFVLAKLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAP
TLHRMSIQAFEPKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSR
YNIISPAHGKPISLPTQDIIIGSYYLTTVSKEFDSLREEDVKWKFSSPEEAMLAYHLGFI
KLHTPILIKVAVNGEEKRIKTTLGRVIFNSILPEDLRDYNRIFDKKQINTLVYETFKRHG
IDRAADLLDDIKDIGFHYATVSGLTLSLKDLKVPPERDEILRKTWEKVRIIEENYEKGFL
TEEQRKSEIIRLWMSVTEEITKLTSRTLAEDPFNPIYMMVNSGARGNIDQVKQLAGIRGL
MIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTYGARKGQVDTA
MNTSFAGYLTRRLVDVAQSVTVAEPDCGTHDGIRAMDLIKEGTVVEKMNEFLFGRVLARD
VLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEIDITELSLPNMYA
EIAEPVGEYEEGTELTWDVVKAAKNEGKYRIKVKVYPVVGTVYAEEEPLYDKKGERQLLV
YQEVINEIVAKMLEENGIEKVPVRPDIIVRSPLTCESEYGVCAACYGMDLSNHKIVNVGE
SVGIVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSGLTTVEKTFEPYAFLREEKSGGKKE
IKKYYGSEAILCEVDGFVRDIATDESGRTVIYVEDYAGNIHAYKVPKRAKVRVEKGQKVL
RGETLTSGAIVWWKLLELESEKGVMTAMNLLKIIKNAYVQQGVSIHDKHFEIIFKQMLSM
ATIIDPGDSDYLPDQLVPLVDIKRFNREILEGNAKVEENRKWVIGKTLAKRIITETEGGE
LVELAQKGDEVTEELLKKIIEAGIKEIDVFEKDKVVTYQILPKEPIKYKRRLLSLKKAAL
NYPGWLSAAAFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPSGTGLDVFAGIQVEET
PRAAVEEELA
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgtcctctttcaagaggaagataaaggcgattcagataaagatagcctctcca
gaagtgataagaagctggtctggaggagaggtcaagaaacctgaaacgatcaactacaga
acgttcaaacccgagagagatggtcttttctgtgagaggattttcggtcctgtgaaggac
tacgaatgtgcctgtggtaagtataagggaaagaaatacgagggcaccgtctgtgagagg
tgtggagtcagggtcgaatccagagaagccaggagaaaaaggatggggcacatagaactg
gcagcacccgctgtgcacatctggtacctcgagagcataccgagtgtccttggaacactc
ttgaacatgagcacttcagacctggaaaacatcatctactacggcagccgccgtgtcata
gaaagggctttcattgtgactgatcccaaagatactccgttctcccagggggacgtgatc
tacgagaccgagtacaggatatacaggaaaaagtgggatttcgaagttgagcaggcgttc
gtggtgaagaatccaaaatctcctgttctttctgatattgatggagaagtgactttgaag
acagaaaagtccatcacaggaagggaaatcacctggatcatagtgaagaacatcaccaga
gccacacacacggtgctccctggaatgattctcattgtgaaagatggtcaggaagtggaa
aaaggacaggatctgacgaaagaaatgacaatcgaccctgtttacgctccgtttgacggt
cacgtggaaatagatgaactttcgaatactattacgttgaaacctctcacaaccagtaag
gatcagccggttgttttcacggctccttacggagcaaagattcttgtttcgaacggccag
aaggtgaaaaaaggtgatcagatcacgacttctaccagcctcccatccgtcaaatcgagc
atatctggtacagtgagatttggttccaacctcaacataagagcgcttgaagacggaaac
ttcgaagtgctctccaccggtgaagtctatgtagaacaggttatagaggagagaaaatat
cctgtctttgaaggagcgcttgtctacgttaacaacggcgaccaggtgaagaaaggggat
cacttagctgacagattcctcttcgaggaagagtatctctctgccaccgagtacaaaatc
ttcgagtctcactatccaaccatgttcgatgttgaagagagaacggaaaacgacagaccg
atcgtggtcataacggatatagatcccgaggtttccaaagagacaggcttgaaagttggc
gatatagtcacagaaaacgagtacgaagcgtatcttcagatatatccagaaaagatagtg
gctgatgccggagcgcaggcgataaagaaactgcttcagaatctggatctggaagcgctt
caggcggaaatcgaagcggaactcaaaaagttaccttcttccagctcgaaggcgataaag
ctcagaagaaggttgaagatggtgaaggatttcctgaaatctggcaacaaacccgaatgg
atggttcttgaggtcgttcccgtgattccacccgatctcaggccgatgatacagattgag
ggaggaaggttcgccacaacagatctcaacgaactttacagaagactcataaacagaaac
aacagactcaaaaaactcctggaactcggggcacctgagatcattctgagaaacgagaaa
agaatgcttcaggaagcggttgatgctctcattcacaacggctctgattcggagggaaag
agaagcagaagagccgttttgaaagacagaaacggcaggcctctgaaatcgctcaccgat
ctcctgaagggaaagaagggaaggttcagaagaaacctgcttggaaagcgtgtggactac
tctggaagagcggtcattgtcgtgggaccgcatctgaaaatacaccagtgcggtattcca
aagaaaatggcaatggagctcttcaaaccgtttgttctggcgaaacttcttggagagggt
tcttccagcaaaaccatgagaaaggtcaaaaaagcgatcatagaaaaagagatgccggaa
gcttgggaagtgctcgaagaagtgataaagggaagcgttgttcttttgaacagagctccc
acactccacagaatgtcaattcaggcgtttgaaccaaagctcgttgaaggaaacgccata
cagctccatcctgtcgtgtgtccgcctttcaacgcggatttcgacggtgaccagatggcg
gttcatgtacctctttcagccgcagcgcaggcagaggcaagatttctcatgctttcgaga
tacaacatcatctccccagcgcacgggaagccgatttcactgccaacgcaggatatcatc
ataggctcttactatctcacaacggtcagtaaagaattcgattcactgagagaagaagat
gtgaaatggaagttctcttcgcccgaagaggcaatgctggcttaccatcttggattcata
aaacttcacactccgattctgataaaggtagctgtcaacggcgaggaaaaacgaataaag
acgacactgggaagagttatcttcaacagcattctcccggaagatttgagggattacaat
agaattttcgacaaaaaacagataaacaccctcgtctatgaaacgttcaagagacacggc
atagacagagctgcggatctcttggatgacataaaagacatcggcttccactacgcaacc
gtttccggactgaccctctcgctgaaagatctgaaggtaccgccagagagagatgagatt
ctcaggaagacctgggagaaggtcagaataatcgaagagaattacgaaaagggcttcctg
acggaggaacagagaaagagtgaaatcatacgactctggatgagcgtgacagaggagatc
acaaaactcacatctagaacgctcgcagaggatccgttcaaccccatatacatgatggtg
aactctggtgccagaggtaacatagatcaggtgaaacagcttgccggtatcagaggtttg
atgatcaaggcgtacgacccaagatccagggaaataaaatccaagatcttcaagggtcag
gcgatacacgaagcactcacattcgattacccggtcgataagaacctcagagaaggtgtt
gacatcctgcagttcttcatatccacctacggtgctagaaagggacaggttgacacggca
atgaacacatccttcgcgggatatctaacgaggcgtcttgtggatgtagcccagagcgtt
acagtggcggaacccgactgtggaacccacgatggaatcagagccatggacctgataaaa
gaaggaacagttgtagagaagatgaacgagttcctctttggtagagtgcttgcaagggat
gtacttgatccagaaacaaaagaagttttgaagaatccagaaacaggcaaggagtacacg
agaaacaccatgctcacggatgacgatgcgaacttcctggcctcttacaagaaaatggtt
gacgttgtgagatacgaagagatagacataacagaactctcgcttcccaacatgtacgcc
gagattgcagaacccgttggagagtacgaagaaggaacggaactcacctgggatgtggta
aaagccgctaagaacgaagggaaataccgcataaaggtgaaggtctatcctgtcgttgga
accgtttacgcggaggaggaacctttgtacgataaaaaaggtgaaagacagcttctcgtg
taccaggaagtgataaacgagatcgtggcgaagatgctcgaagagaatggaatagaaaaa
gttcccgtgagacccgatatcattgtgagatcacctctcacctgtgagtctgaatacggc
gtctgcgctgcctgctacggtatggatctttccaaccacaagatagtgaacgtcggtgag
tctgtgggaatcgtagccgctcagtccataggagagcctggtacacagctcacgatgagg
actttccacgttggaggagtcatgggtgcgagcgacatcgtcagcggtctcacaactgtg
gagaaaacgttcgaaccgtacgcgttcttgagagaagagaagagcggtggaaagaaagaa
atcaaaaaatactatggatccgaggcgattctgtgtgaagtcgatggtttcgtgagggac
atagcaaccgatgaaagtggtagaacggtgatttacgtcgaggattacgccggtaacatc
cacgcttacaaagtaccgaagagagcgaaagtaagggtagagaaaggccagaaagtcctg
agaggagaaaccctcaccagcggtgccattgtgtggtggaaactcctggagctcgaatcg
gaaaaaggtgtaatgacggcgatgaatcttctgaagatcataaagaacgcctatgtccag
cagggcgtgagtatacacgacaaacacttcgagatcatattcaaacagatgctcagcatg
gcaacgatcatcgatccaggtgacagcgattatctaccggatcagcttgtaccgcttgtg
gatataaagagattcaacagggaaatcctcgaaggaaatgcgaaagtggaagagaacagg
aagtgggtcataggaaagacgctcgcaaagaggatcatcacggaaacagaagggggagaa
cttgtagaactcgctcaaaaaggcgatgaagtgactgaggaacttttgaagaagatcata
gaagcgggaataaaagagatcgacgtcttcgaaaaagataaagttgtgacgtaccagatt
ctcccgaaggaacctatcaagtacaagagaagactcctgtcgctcaaaaaagcagctctc
aactaccctggctggctcagtgcggctgcgttcgaagaaaccgcatgggtgctgactgcg
gcggcgatcgaagggaaggtcgatccactcattggattgaaggaaaacgtgatcgttggt
cagctgataccctcaggaacggggctcgacgtttttgcggggattcaggtggaagaaacc
ccaagggccgcggtggaagaagaactcgcgtga
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integrated database retrieval system
