Thermodesulfobium narugense: Thena_0201
Help
Entry
Thena_0201 CDS
T01488
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tnr
Thermodesulfobium narugense
Pathway
tnr03410
Base excision repair
tnr03430
Mismatch repair
tnr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tnr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Thena_0201
03430 Mismatch repair
Thena_0201
03440 Homologous recombination
Thena_0201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnr03400
]
Thena_0201
DNA repair and recombination proteins [BR:
tnr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Thena_0201
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Thena_0201
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Thena_0201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AEE13850
UniProt:
M1E678
LinkDB
All DBs
Position
212828..214507
Genome browser
AA seq
559 aa
AA seq
DB search
MPKSETKMSCDLPRYRWRKPLFENILDKSVYGYVRYILENRQLSESHIERFLSISIDNFD
PKFENDRVERAIHIFKNMINADEPIGIFGDYDADGVTSVAILCSFLSYLGKKFIFKLPTR
DEGYGIRVEVLEFFKDMGINNIVVLDSGSNSREVWQTARKMGLNLLYLDHHEILCDLEKD
LNLINPHLWNGDLLCSAGVIFRFLMLLDIFKNCCEIFPTLLELATIGTVGDSIELLGDSR
IIVKLGLNQLKNSTIPGIVNFFNIKMPYISIEDLMFYLVPLINSAGRVGKPDLALSFLLE
KNFHKSIEKCNLLESLNQKRKSIQSQFFSICMSILNESLYSPHVHFMRLDNCPKGIIGPL
ASRLACSYKKPFFLCSGEQLLYGSGRSPGNDIDLIELYNQIKSEYPAINEHFVNFGGHQG
AVGFTIKKDAFPEIKKRFERFRIRESIPFLNIDIIFDGFSIDDNFFRALKAMTPFGFGNQ
KVLVCTKGIAFNNLESSIDYSEVVVFRHYNNIRWIIKNNRQILKDLLNAKFDVVWEAKVK
NDGIDFEFLDAKVVFLECC
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaaaagcgaaacgaaaatgtcctgtgatctgcctagatacagatggagaaagccc
ttatttgaaaatattttagacaaaagtgtttatgggtatgtaagatatattcttgaaaac
agacaattatcagaaagccacattgaaagatttttaagtatttctattgacaattttgat
cccaagtttgaaaacgatcgcgtagagagggccatacacatttttaaaaatatgatcaat
gctgacgaacctattggtatctttggggattatgatgctgatggggtgacttctgtagca
atcctttgtagttttctatcttatctggggaaaaagtttatatttaaacttccgacaaga
gatgagggctatggtattagggtagaagttttagaattttttaaagatatgggcataaat
aatatcgttgttttagattcaggctcaaattcaagagaagtatggcagactgcaagaaaa
atgggccttaacttgctttatctggatcaccatgagattctttgcgatctagaaaaggac
ctaaaccttataaaccctcatttgtggaatggagatctactttgcagtgcgggtgtgata
ttcaggtttctgatgctattagatatcttcaagaactgttgtgaaatatttcctaccttg
ttagagttggctactattggaacagttggagattctatagaactacttggagacagcaga
attattgtaaaattaggcttaaatcaattaaaaaacagcacaattccaggaatagtaaat
ttttttaatatcaaaatgccttatatttccattgaggatctaatgttttatctggtcccc
ctgataaattctgctggaagagttgggaaacctgatctggctttgagtttcttgcttgaa
aaaaattttcacaaatcaattgaaaaatgtaatcttttagaatctttaaatcaaaagaga
aaatctattcagagtcagtttttctctatctgcatgagtattttgaatgaaagcttatac
tctccacatgtgcactttatgagattggacaactgtcctaaggggataatcggtcctctt
gcatctagacttgcgtgttcttataaaaagccattttttctttgttctggagaacaattg
ttatacggatcagggagaagtcctggaaatgatatagatttgatagaattatacaatcaa
ataaagtcagaatatccagctataaacgaacactttgtaaattttggcggtcatcaaggt
gctgttggtttcacaataaaaaaagatgcctttcctgagataaaaaaaagatttgaaagg
tttagaataagagaaagcataccatttttaaatattgatataatttttgatggtttctca
attgacgataacttttttagagccttaaaggctatgaccccttttggatttggtaaccag
aaggttttagtatgtactaaagggattgcatttaacaatctcgaaagtagcatagattat
tcagaagttgtagtttttagacactataataatataaggtggataataaaaaataataga
cagattttaaaggatttgcttaacgcaaaatttgacgttgtttgggaagcaaaagttaag
aacgatggaattgactttgaatttttggacgcaaaagtagtttttttggaatgttgttag
DBGET
integrated database retrieval system
