Thermodesulfobium narugense: Thena_1537
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Entry
Thena_1537 CDS
T01488
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tnr
Thermodesulfobium narugense
Pathway
tnr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thena_1537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnr03019
]
Thena_1537
03009 Ribosome biogenesis [BR:
tnr03009
]
Thena_1537
Enzymes [BR:
tnr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thena_1537
Messenger RNA biogenesis [BR:
tnr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thena_1537
Ribosome biogenesis [BR:
tnr03009
]
Prokaryotic type
rRNA helicases
Thena_1537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UTP25_NTPase-like
CMS1
Cas3-like_C_2
WSD
NAT10_TcmA_helicase
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEE15149
UniProt:
M1E9E7
LinkDB
All DBs
Position
1586861..1588456
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AA seq
531 aa
AA seq
DB search
MSKSAYFGEIELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFG
IPIVEKTTKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALK
NGAQVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQ
TLLFSATMPDPIMALTKKYMKNPKVVSISKEQLTVPLTDQFYCEAKDKLEALCRILETED
MDKTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDV
AARGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKVI
RTTIKRKEVPSISDLLEKQKDELKNLISKIIRQENISHYLSIVEEMTEEFEPEKIAAAAI
RLYQEGEPEEKLEVDKEKFKKTGAKEGMTRLFINIGKEKNISKDDIVNYICEEGDMKKKD
IKNIRILDKFTFLEVPEEASERIIAVLHKSVIKGHKIHAEPARPIRKNENF
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaaagtgcttattttggagaaattgaattaagcaaggatacagttttagctctt
aaagagatgggtttcgaagaaccatccgaaattcaaaaacaaacaataccaattgtaatg
caaggatttgatgtaataggccaggcgcaaactgggacaggtaaaactgcagcatttgga
atcccaatagttgaaaaaactaccaaagatagggttcctcaatcactagtacttacacct
acaagggagcttgcaatacaggtcgctgaagaaatatctaaaatatcaaaatacagaggg
cttagagtagttccaatttacggcggtcaatctattgaaaggcagataaaagctctaaaa
aatggagcccaggtaataatcggtacacctggaaggttgattgatcacattaaaagagga
acattatttttgtccaaaatttcaatacttgtacttgacgaagctgatgaaatgcttgat
atgggatttattgaagatatagaaacaattatgaaatcaattaaaaacgaaaatatacaa
actctgctattttcagcaaccatgccagatccaatcatggcactcaccaaaaaatacatg
aaaaatccaaaagtagtctcaataagcaaagagcaacttacagtacctttgacagatcag
ttttactgtgaggccaaagataaacttgaagccctatgccgtatattagaaacagaagat
atggacaaaacaattatattctgcagaacaaaaaaaggcgtagatgaactggttgcgtca
ttaaacacaagggggtatagcgccgaaggcttgcacggagatctaacacaagcccaaaga
gataaggtaatgaaatcatttagggaaagaaatttagaggtccttgtagcaacagacgta
gcagcaagaggactcgatatttctgatgttagtcacgtaattaatttcgatatacctcaa
gatccagaatcatatgttcacagaataggaagaaccgggagagcaggcaaatcaggtata
gctataacttttataactcccagagaatttagacaactaagattgattgaaaaagttatt
agaacaactattaagagaaaggaagttccaagtatttcagatcttttagaaaaacaaaaa
gatgaattaaagaatttaatttctaaaataattagacaagaaaacatatctcattatctt
tcaatagtcgaagagatgactgaagaatttgaaccagaaaaaattgctgctgccgcaatc
agattatatcaggaaggagaaccagaagaaaaacttgaagttgacaaagaaaagttcaaa
aaaacaggggcaaaagagggcatgacaaggctttttataaatattggcaaagagaaaaac
atttcaaaagacgatattgtaaactatatctgtgaagaaggagatatgaagaaaaaggat
ataaaaaatataagaatattagataaatttaccttcctcgaagtgccagaagaagcatca
gaaagaataattgcagtattgcacaaatcggttataaaggggcacaaaatccacgcagag
cctgcaagacctattagaaaaaatgaaaatttttag
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