Thermococcus nautili: BD01_0334
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Entry
BD01_0334 CDS
T03065
Name
(GenBank) putative RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
tnu
Thermococcus nautili
Pathway
tnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BD01_0334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnu03019
]
BD01_0334
Messenger RNA biogenesis [BR:
tnu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BD01_0334
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
BD01_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
OB_RRP5_4th
RRP4_S1
Prok-RING_1
PCB_OB
A2L_zn_ribbon
DZR_2
HVO_2753_ZBP
Zn_ribbon_PaaD
Zn_ribbon_3
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AHL21961
UniProt:
W8NZR5
LinkDB
All DBs
Position
complement(286473..287066)
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AA seq
197 aa
AA seq
DB search
MEDRKVKNGDLVLPGDYLGVIEEFMPGEGVREENGELYATRAGKVRINPEKMEISVEPIT
DTPPLPKVGDIVLARVIEVKPQAVIVQLLQIEGRENDREIATSKLAGIHISQVKEGFVED
ITKEFKIGDVVRAKVIANEKSPIQLSTKGKDLGVVYALCSRCRTPLIRRGDKLICPRCGN
VETRKLSPYYRKLKVSL
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggaagataggaaggttaaaaacggtgaccttgtcctccccggagattacctcggggtc
atagaggagttcatgcctggcgaaggggttagagaggagaacggcgaactttacgcaacc
agagcgggcaaggttagaatcaacccggagaagatggagataagcgttgagcctataacc
gacacaccgcctcttccaaaggtcggggacatagtcctcgcgagggtcatagaggtcaag
ccacaggccgtaatcgtccagctcctccagatagagggtcgcgagaacgacagggagata
gcgacctcaaagctcgccggaattcacatctcgcaggtcaaggaagggtttgttgaggac
ataaccaaggagttcaaaattggcgacgtggtcagggcgaaggttatagccaacgagaag
agcccgatacagctctcgacgaaaggaaaggacctcggcgtcgtttacgccctctgctcc
cgttgcagaacgcccctcatcaggcgcggggacaagctaatctgcccgcgctgtggaaac
gtcgagacgagaaagctctccccctactacagaaagctgaaggtgtctctatga
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