Thermococcus nautili: BD01_0476
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Entry
BD01_0476 CDS
T03065
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tnu
Thermococcus nautili
Pathway
tnu03410
Base excision repair
tnu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BD01_0476
03430 Mismatch repair
BD01_0476
03440 Homologous recombination
BD01_0476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tnu03400
]
BD01_0476
DNA repair and recombination proteins [BR:
tnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BD01_0476
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BD01_0476
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BD01_0476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
FAS_pseudo-KR
Motif
Other DBs
NCBI-ProteinID:
AHL22101
UniProt:
W8P045
LinkDB
All DBs
Position
complement(407179..408594)
Genome browser
AA seq
471 aa
AA seq
DB search
MDREAFLERVREGAELIKMHIELGHTIRLISHRDADGITAGAILAKAVAREGGSFQLSIV
KQVSEELIDELARENREIYVFSDLGSGSIELIEKKLDGTVVVADHHPPEGDFSSESKVLV
NPVPFGANSVRDLSGSGVAYFVAREMNEKNRDLAYIATVGAVGDMQEIDGTFHGLNLEIL
EDGKKLGILEVRKELRLFGRESRPLYQMLAYATNPEIPEITGDERKAIEWLRARGFDPEV
HYWQLREEEKRKLHEALLVHMIKHSAPKEAIDRLIGDVVVSPLYPEGDVRHEAREFATLL
NATGRLNAGTLGVAICLGDEDAYKKARKMLEDYKREQIEARKFLIQNWSMAEEGEHAYVF
YAGKNIRDTLVGIVANMAINAGLANPEKPVVVIADSEEDENLVKASARTTEKALKKGYHL
GEALKEVAEKLGGEGGGHAIAAGIRFPKGRIDEFIKLFNEALAKQVKSNED
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtggacagggaagcctttctggagagggttcgcgagggagccgagcttattaagatgcac
atcgagttaggtcacaccataaggctaatctcgcaccgcgacgcggacgggattaccgcc
ggcgctattctggccaaagcggtggcgagggaaggcggaagttttcagctcagcatcgtc
aagcaggtcagtgaagagctcatcgacgagctcgcgcgggagaacagggagatatacgtc
ttcagcgacctcggaagcggttccatagagctcattgagaagaagctcgacggaacggtt
gtcgttgccgaccatcacccgccggagggcgacttttcgagcgagtccaaggtcctcgta
aacccggttcccttcggggccaacagcgtccgcgatttgagcggttccggcgtcgcctac
ttcgtcgcaagggagatgaacgagaagaacagggatttggcctacatagcgaccgttggc
gcggtcggcgacatgcaggagatagacggcaccttccacggcctcaacctcgaaatcctc
gaggacggcaagaagctcggcatccttgaggtcaggaaggagttaaggctcttcggcagg
gagagcagaccactctaccagatgctcgcctacgcgaccaatcccgaaataccggagatt
accggcgacgagaggaaggcaatcgaatggctccgcgcgaggggcttcgacccggaagtc
cactactggcagctccgcgaggaggaaaaacggaagctccacgaggcccttctcgtccac
atgataaagcactccgcgccgaaagaggccatcgacaggctcatcggtgacgtcgtcgtc
agcccgctctatcccgagggcgacgtcaggcacgaggcgagggaattcgcgacgctcctc
aacgcgaccggtcgcttgaacgcgggaacgcttggagtggcaatatgcctcggcgatgaa
gacgcctacaagaaggccaggaagatgctcgaggactacaagagggagcagatagaggcg
agaaagttcctgattcagaactggagcatggccgaggaaggcgagcacgcctacgtcttc
tacgccggcaagaacatccgcgacacgctcgtgggcatagtggcaaacatggccatcaac
gctggcctggccaaccccgagaagcccgtcgtcgtcatagctgacagcgaggaggacgag
aacctcgttaaggcctcagcaaggacaaccgagaaagcgctcaaaaagggctaccacctc
ggtgaggccctgaaggaggtcgccgagaagcttggaggcgagggaggcggccacgccatt
gccgcgggcattagattcccaaagggcaggatagacgagttcataaagctgttcaatgaa
gctctggcgaagcaggtgaagagcaatgaagattga
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integrated database retrieval system
