Thermococcus nautili: BD01_0929
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Entry
BD01_0929 CDS
T03065
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tnu
Thermococcus nautili
Pathway
tnu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tnu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BD01_0929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tnu03019
]
BD01_0929
03009 Ribosome biogenesis [BR:
tnu03009
]
BD01_0929
Enzymes [BR:
tnu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BD01_0929
Messenger RNA biogenesis [BR:
tnu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BD01_0929
Ribosome biogenesis [BR:
tnu03009
]
Prokaryotic type
rRNA helicases
BD01_0929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHL22549
UniProt:
W8PKD8
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All DBs
Position
806908..808116
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AA seq
402 aa
AA seq
DB search
MSFKELGLSKASVEAVERRGFSEPTDVQREVIPLILDGKSDVVGQSKTGSGKTAAFGLPI
LDLVDESRKEVQALILTPTRELAIQVSEELRSLRGKRKIDIYAIYGGQPIGPQIRALERA
QIVVGTPGRVLDHIRRGTLRLDSLRFFVLDEADRMLDMGFQEDIEAIFRATPREKRVMMF
SATMPMDVLLLAKKYMKNPEVVIVSRDELVPGEVEQEFIEAVPTRRYGILKKILSEDFYG
IIFCQTKVETRELAERLRKDGFRAEALNGDMSQPSRERTFGRFKRGKTEILVATDVAARG
LDVPEISHVVNYSIPMNAEQYIHRIGRTGRMGKKGKAITFIAPGELRRLRYIARQAGVDV
RKSELSEELPKEYREMVRRDELENEYRHRWGKKRPRQRRRRY
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaggagcttggcttatctaaggcctccgttgaggccgttgagagaaggggt
ttctcagaacccacagacgttcagagggaagttataccgctcattctcgacggaaagagc
gacgtcgttggccaatcaaagaccggaagcggcaaaactgcggcctttggtcttccaatc
ctcgaccttgttgatgagagtagaaaggaagtccaggcgcttattctaacgccgacgagg
gagctggcaatacaggtaagcgaggagcttcgctcactccgcgggaagcggaagatagac
atctacgcaatctacggaggtcagcccatagggccccagataagggcccttgagagggct
caaatcgtcgttggaacgcccggcagggtgctcgaccacataaggcgcggaacgcttaga
cttgactcgctccgcttcttcgtcctcgacgaggccgacagaatgcttgatatgggcttt
caggaggacattgaggcaatcttccgggccactccgagggaaaagcgcgtgatgatgttc
tcggcgacgatgccgatggacgttctgctgctcgccaagaagtacatgaagaaccccgaa
gtcgtcatcgtgagcagggacgagctggttccaggcgaggtcgagcaggagttcatagag
gccgtcccgacgaggcgctacggaatcctcaagaaaatcctgagcgaggacttctacggc
ataatcttctgccagacgaaggtggaaactcgggagctggcggagaggctcaggaaggac
gggtttagggccgaggccctcaacggggacatgagccagccctcaagggagagaaccttc
ggaaggttcaagcgcgggaagaccgagattcttgtggcgacggacgttgccgcgagggga
cttgacgtcccggagataagccacgttgtcaactactcaatccccatgaacgcagagcag
tacatccacaggattggcagaacaggtagaatggggaagaaggggaaggccataaccttc
atcgcgcccggtgagctcaggagactcaggtacatagcgaggcaggcgggagttgacgtc
aggaagtcggagctgagcgaagaacttccgaaggagtaccgggaaatggttcggcgcgac
gagcttgagaacgaatacaggcacaggtggggcaagaagaggccgaggcagaggagaagg
cgctactga
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