Thermococcus nautili: BD01_1004
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Entry
BD01_1004 CDS
T03065
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tnu
Thermococcus nautili
Brite
KEGG Orthology (KO) [BR:
tnu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tnu03016
]
BD01_1004
Enzymes [BR:
tnu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BD01_1004
Transfer RNA biogenesis [BR:
tnu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BD01_1004
Prokaryotic type
tRNA splicing ligases
BD01_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHL22622
UniProt:
W8NTZ2
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All DBs
Position
869736..871175
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AA seq
479 aa
AA seq
DB search
MVPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRQDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPRIKELVD
TLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMDGADPS
AVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIYDEEIAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMHIVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHP
DVPKAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGD
RLRNELLQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHQAGIAKLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggttccgctgaagaggattgacaaaatccgctgggagattccgaagttcgacaagaga
atgcgcgttccgggcagggtttacgctgacgaccagctcatcgagaagatgcggcaggac
aggacgctggagcaggccgccaacgttgccatgctacccggcatctacaagtactccata
gtgatgcccgatgggcatcagggctacggcttcccgattggaggcgtcgcggcgttcgac
gtgaaggagggcgtaataagccccggaggcgtcggatacgacatcaactgtggcgtcagg
ctcatcagaaccaacctcaccgagaaggaggtaagaccacgcatcaaggagctcgttgac
acgctcttcaagaacgttccgagcggacttggaagcaagggaagggttagactccactgg
acccagctcgatgatgtcttagcggacggtgccaagtgggccgtcgacaacggctacggc
tggaaggaggacctggagcaccttgaagaaggcggaagaatggacggagcagacccaagt
gcggtaagccagagggcgaagcagaggggtgctcctcagctcggctccctcggctccgga
aaccacttccttgaggttcaggtcgttgacaaaatctacgacgaggagatagctaaagcg
tacggcctcttcgaggggcaggtcgtcgtgatggtccacaccggttcgcgcggtctcggc
caccaggtggcgagcgactacctcaggataatggagaaggccaacaggaagtacggaatc
ccctggcccgaccgtgagctggtgagcgttcccttccagagcgaagaaggtcagaggtac
ttcagcgcgatgaaagctgccgcgaacttcgcctgggccaacaggcagatgataacccac
tgggtcagggagagctttgaggaggtcttcaagaggaaagcggaggacatggagatgcac
atcgtttacgatgtggcacacaacatagccaaggtggaggagcacgaggtcgacgggagg
aaggttaaggtcgtcgttcacaggaagggagcgacgagggccttcccagcaggccacccg
gacgtgccgaaggcctatcgcgacgtcggccagcccgtccttattccgggctcgatggga
accgcgagctacgtcttggcaggtgcagaaggctcgatgagagagaccttcggaagctcc
tgccacggcgccggaagactgctcagcaggaaggccgcaacgaggcagtaccgcggtgac
aggctcaggaacgagctcctccaaaggggtatctacgtccgcgcggcttcgttaagggtc
gtcgcggaggaggcaccgggtgcctacaagagtgtcgataacgtcgtcaacgtcgtccac
caggctggcatagcaaagctcgtcgcgaggatgcgtccgatgggcgtcgcgaagggctga
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