Temnothorax nylanderi: 139767930
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Entry
139767930 CDS
T11678
Symbol
Sym
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tny Temnothorax nylanderi
Pathway
tny03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tny00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139767930 (Sym)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tny03021
]
139767930 (Sym)
03019 Messenger RNA biogenesis [BR:
tny03019
]
139767930 (Sym)
Transcription machinery [BR:
tny03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139767930 (Sym)
Messenger RNA biogenesis [BR:
tny03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139767930 (Sym)
U7-dependent histone pre-mRNA processing factors
139767930 (Sym)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
SecD-TM1
Motif
Other DBs
NCBI-GeneID:
139767930
NCBI-ProteinID:
XP_071553781
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MDPRLHRRSEAEKTPRDLIVEWLNEASMGLTEEIKVTNICKVQELLLNKEPHLLEHYLDD
ILQFAVDRSAEVRKTVTGFIEEAGIKYPEVIPRTVQILLRLASDEASAVAKRTLRASGRI
LRAALKWIASAAVVTTDMELAWTQLCALKVQIINMIDSDNDGIRTQAVKFLEGVILIQTY
PDPDSPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKMRPQFMPNVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEYAS
TIAKQLAQLGAKEQEIIKAYPKPEDVRRMKKRQQEMAAASAAKRVKIEVALVPDEAEAAP
SPVPAPKLPELIELSESFIAERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTATTDIN
IQRQTIAKLLAAQIKQTKAKKSKKDKEEDAVMEDLIKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARTRLKALKLVEVTKPLPKETKERMLLMAVNRILLSEKTAVLGGV
AAVRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLIQGKDRDTLLSRLYLEAPLITEDAVEALKMVSSDETR
GLAPLQLLKEMVVRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCQLYGRAELSKLIEE
YAVLYLGFLRLHNPPEIVFGQDRGRPQIESQWTDSTTRACLGLYLSLLTEHQDLIHELAR
VYTSMGADVKRIVLRLVEGPVRSLGMGSPQLLALVENCPKGSETLVTRIIHILTEKSAPS
AELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NDSGVPHTSPITPAELLIALHNIDPNKAELKTVIKATSLCFAEKQAYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPAQLAEALRMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKVPCDMHDE
FDIAPPGDYSNDQKPDTMEIDLSEPAPPGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgcttgcatagaagatccgaggcggaaaagacgccgcgcgatttgatcgtt
gagtggttaaacgaggcttctatgggcctcactgaggaaattaaggtcacaaacatatgc
aaagtacaggaacttttgttgaacaaggagccacatttgttagaacattatttagacgac
attctacaattcgcggtagatagaagcgctgaggtcagaaagaccgttacaggatttatc
gaagaagctggaataaagtatccagaagtaatccctcgtacagttcaaatacttcttaga
ttagcgtccgacgaagcgtcggctgtagctaaacgaacgcttagagccagtggcagaatt
ctcagggctgctctcaagtggatcgctagtgctgctgtcgttaccacagacatggaattg
gcatggacacagctgtgcgcccttaaagttcaaattataaatatgattgacagcgataac
gatggaataaggacacaagccgtaaagtttcttgaaggcgtaattttaatacagacgtat
ccagatccggacagtccaaagaaacccgatgacttctctctcgaagatattccgctaaca
ttgaaaattgctcgtagacgaaaattggaggaagaggcaaatcacgttatggatttgctg
attaagtttcatgggtcaccgcatgtcagcagcgttaatttaatgacgtgtatgggatct
ttggcgttaatcgctaaaatgagaccacaatttatgccaaatgtaattcaagccttacag
aggttacaacatgatctaccaccaacgctgtctgattctcaagtaaccagtgtacaaaaa
caattgaaactcacacttctcggattgatgaaacaccctgctagtatagagtatgcttca
accatagctaagcagctggctcagcttggagcgaaagagcaggaaattattaaagcttat
ccaaaaccggaagacgtccgtcggatgaaaaagcgtcaacaggagatggccgctgctagt
gctgcgaaacgagtaaaaattgaagtggctttagtacccgatgaagctgaagcggcacca
agccctgttcccgcgcctaaattgccagaattgattgaactttccgaaagttttattgct
gaaagactcagtgtagaaattgcaacagatttagtgatggatagtatggcatgggttccg
gacactatgacgacaatttttcaaagagaatatcaacccacggcaactactgatattaat
atacaacgtcaaacgattgctaaacttctagcagcacaaatcaaacagacgaaagcaaaa
aagagcaaaaaagacaaggaagaggatgccgtgatggaagatctaattaagaatcccacc
attagcgtagccgaggcaaagcgggagcgtaaacgtgaaaaggatcgggagaaagagaaa
gaggcgaaagcgtcattagaggctcatgaaaaatctcttgcaaaagccagaactcgtttg
aaggcgttaaaattagttgaagtgacaaaaccacttccgaaggaaactaaagaacgaatg
ttactgatggcagtcaataggatattgctttcagaaaagactgcagtgcttggtggtgta
gctgctgtaagatccaaaattctgactacgctagcagccactttcaatccttatattaaa
gaagctgtactgcgttatattaccgatgacatgcgaaaccgattagatttagcgttaggt
tggctatatgaagagtatgcgttgctacagggatttcaaaggcgaactacgttatgtaca
aaaccacaagaagctccacatcaggcatataacttcttattgtgcactttagtgtcagct
attgatttgattcagggtaaagatcgtgatactttgctatccagactttatctggaagca
ccattaataacagaagatgctgtagaggctttaaaaatggtgtcatctgatgaaactaga
ggtcttgcaccattgcagcttctaaaagaaatggtagtgcgtagaccgacgaaacaactg
gtatttttaaatgttttattatgccacaccggacatgaaaacaatacgatacgagaagct
gcaatacaattggtctgtcagttatacggccgagcagaattaagtaaactgatcgaggaa
tatgcagtcctgtatttaggctttttacgtcttcacaacccaccggagattgttttcggg
caagatagaggcagaccgcaaatcgagagtcagtggaccgactcaactacacgtgcctgc
ctaggattatatctttctcttcttactgaacatcaagatctcattcacgaattagctaga
gtatatacgtcaatgggagcagatgtgaaacgtattgtactaagactagtggaaggacca
gtgagatctctgggtatgggtagcccgcaactgctcgcgcttgttgaaaattgtccaaaa
ggatctgaaactttagtcacgagaatcatacacatccttacagagaagtctgccccaagt
gcagagttggtggccagggtacgcgagttatatcagactagagtttccgacgtcaggttt
ttaataccagttctgaacggactgacaaagaaagaagtaattgccgcattgccaaaatta
atcaaattaaatcctatcgtcgtgaaagaggtgtttaacaggttgctcggaacacataat
aacgacagcggggtacctcatacatcgcctattacacctgcagaattattgatagctcta
cataatatagatccaaacaaggctgaattaaagaccgtcattaaagcaacatctctttgt
tttgctgagaaacaagcgtatacgcaggaaacggtcgccgttgtgatgcaacatcttatg
gagatgacacctttaccgacattattgatgcgcacagtcatacaaagtctggccctttat
cccaggctaagcggattcgttatgaacatacttcaacgtttgattctgaagcaagtgtgg
aaacagccgaaagtgtgggaaggcttcgtcaagtgctgcgaacgtacgcagccgcaaagt
ttcgctgttattttgcaattaccaccggcacagttagcagaggcactccgaatggcgagc
aatttacgtgctcctttactagctcatgttgaagcttttgccgagaatcagaaagcacac
attccgcaatcaataatggatgtcatacagggtaaagtgccctgtgacatgcacgatgag
tttgatattgcaccacctggtgattattcgaatgatcaaaaaccagatacaatggaaatt
gatctttcggaaccagcccctcccggtttagattag
DBGET
integrated database retrieval system
