Temnothorax nylanderi: 139768656
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Entry
139768656 CDS
T11678
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
tny Temnothorax nylanderi
Brite
KEGG Orthology (KO) [BR:
tny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tny03019
]
139768656
Messenger RNA biogenesis [BR:
tny03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139768656
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
139768656
NCBI-ProteinID:
XP_071555169
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MRPHKFKLPCDVDSFSETDKKVVIVSVFGKSQYRAKGCKTDMLSSILQLNLLDEPEMDQQ
SWCEIEGYYNPKEKTVYLHLRGFLDAYAIVAEYDKFTEKQDCKDFLSVWAHMRDKYARAL
LVLFHISHVMVLTHPTHIFDYSYMHLFRAMDIVRQKLSPQLSDVLSSIHSLPKDWISNVR
PCSPRVLFYFETCPAVFQDPNSEANIKKLEHSLEDQIYHVLRKHRIVTNISSNSLFAIPA
NQEFVYVHTGNTDSRDMLGYMARKLIQSCKTSSGSTPRSLTSLDPPNIAVDDTETETHSF
RSFLQQHINLAFARGFDDNVSRHSIPAHFEVPTLNIFCQVANKVFDYFIHGTDKELSTLH
NLLDTDVKFSKSRCSKVLPRALQAYQENLPQHYTRAYHESKLAHAMTVFEIHARGPLFEE
FSEKLQAECDKHWRAGRQMCEVLSLTGHPCTNPVHRGGSEGAGGGEQTEPREDDSELPVR
EHCSGVRCVCACNCGRIQGSREDPFSLKQANYEYFQMLAKQCGCAQLESVQFPVFQPSTH
NYRAAQLFSATKRHDSFSRNESSTPQETQACSLGADTLNDEITEYGSGGQSPTASDPIEG
DIPRLSSKTSLTPSDSHKVVIEITNSDAENSKDKSLVRQPSTTEYLPGMLHTESPAGLLP
QFSSWSLVCLGPSSLYSHNLGLQHQIGMFPTSAYLLPWDVTVRLEHQKERNPLWPLVGDH
GGYCPRGKNFQNINVIRARKSKGKEFVVKIFVGVEYECPRGHRFMASAPDKVLKATGSGI
VKDSGNKVTSSTADMPLYFPCPCRHTKPLIAQLMRIHVVTPKAPVHVTLNPRVQPGPPPC
PIFVTGCEEPIKLSQSTYWVLRLPYVYMGEKGPYLPPKEQVPPSHGRLLAGMYGICEVVK
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgcataaattcaaacttccttgtgacgtggacagtttttcggaaaccgacaag
aaggtggtgattgtctcggtgtttggtaagtctcagtatcgagcaaagggatgcaagacg
gatatgctgagttctatactccagctgaacctcctggatgaaccagagatggatcaacag
tcctggtgtgaaattgaaggatattacaatcctaaagagaagacagtttacctgcactta
agaggcttccttgacgcttatgcaattgtagccgaatacgataagttcacagagaagcag
gactgcaaggactttcttagtgtttgggcacacatgagagacaaatatgcaagagcgctc
ctagtgctgtttcatatttctcatgtgatggtgctcactcatccgacgcacatcttcgac
tacagttatatgcatttattccgtgctatggacatagtcaggcaaaagctttccccgcag
ctttccgacgtgttaagttccattcatagtctacccaaggattggatttcgaatgtcagg
ccctgttcaccgcgggtgttattttactttgaaacctgtcctgcggtattccaggatccg
aacagtgaggctaatatcaaaaagctagagcattcccttgaggatcaaatttaccatgtg
ttaagaaaacataggattgttacaaatatcagctcgaattccttgtttgcgataccagct
aatcaggaattcgtgtatgtgcataccggaaatacagactcaagggacatgttgggttac
atggcgagaaagttaatacagagctgtaaaaccagttccggtagtacaccgagaagtctc
actagtctggatccacccaatatcgcggtggatgacaccgaaactgagactcactcgttt
agatcgtttttacaacaacatataaatttggcttttgcaagaggatttgatgataacgtc
agtcgacattccataccagcccattttgaggtacctactttaaacatattctgccaagta
gcgaacaaagttttcgactattttattcatggaacggacaaagagctgtcgacgcttcat
aatttgttagataccgacgtgaagttcagtaagagccgatgtagcaaggtacttccaaga
gctttacaagcgtatcaagagaacttgccgcagcattatacgagagcgtatcacgagtcg
aaactggcgcacgcgatgacagtcttcgaaatacacgcccgtggtccgttgttcgaggag
ttcagtgagaaattgcaggccgagtgtgacaagcattggcgagccggcaggcaaatgtgc
gaggtgttgtcgctcaccgggcatccttgcacgaatcccgttcatagaggaggtagcgaa
ggtgcgggaggtggggaacaaactgaacccagagaggacgacagcgagctgcctgtcaga
gagcattgcagcggcgttagatgtgtgtgtgcttgtaattgcggtaggatccaaggctcg
agggaagatcccttcagtctgaaacaggcgaattacgaatatttccagatgttagcgaaa
caatgcggttgcgcgcaattggaaagcgtacagtttcccgtgtttcaacccagcacacat
aactacagagcggcgcagttattttcagcgacgaaacgccacgattccttcagtcgcaac
gaatcctctacgccacaagagacgcaagcttgcagtttaggagccgataccctgaatgat
gaaattacagaatacggtagcggcggtcaatcgccgacagcgagcgatccgatagaaggc
gatattccgagattgagcagtaagacaagtttgacgccgagcgactcacacaaagttgtt
atagaaatcactaacagcgatgcggaaaactcgaaagacaaatctctggtaagacaacca
tcgacgacggaatatctgcctggaatgttgcacaccgaatcaccggccggcttgctaccg
caattctccagttggtctctagtatgccttggaccgagcagcctttattctcacaatttg
ggactgcagcatcagatcgggatgttccctacctccgcgtatctgctaccgtgggacgtg
actgtcagattggagcatcagaaggaacggaatccgctgtggccattggtgggcgatcac
gggggttactgtccccgaggcaagaacttccagaacataaacgtcatacgtgcccgtaag
tcgaagggcaaggagttcgtggtgaagatattcgtcggggtggagtacgagtgtccgcgc
gggcatcgatttatggcgtccgcgcccgacaaggtgctgaaggcgaccggaagcggcata
gtgaaggacagcgggaacaaggtgacgtccagcacggccgacatgccgctctactttcct
tgcccgtgcaggcataccaagcccttgatcgcccagctgatgagaatccacgtggtgacg
cctaaagcgccggtgcacgtcacgttgaaccctcgggtccaacctgggcccccgccctgc
cctatattcgtcaccggatgcgaggagccgatcaagctttcccagagcacatactgggtc
ttaagattaccatacgtatacatgggcgagaaaggaccgtatttaccgcccaaggaacag
gtgcctccgtcgcacgggcgtttgctagccggcatgtatggcatctgcgaggtcgtcaag
tga
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