Temnothorax nylanderi: 139774375
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Entry
139774375 CDS
T11678
Symbol
Tst
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tny Temnothorax nylanderi
Pathway
tny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139774375 (Tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tny03019
]
139774375 (Tst)
Enzymes [BR:
tny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139774375 (Tst)
Messenger RNA biogenesis [BR:
tny03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139774375 (Tst)
mRNA degradation factors
3'-5' decay
Ski complex
139774375 (Tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MTR4_beta-barrel
ATPase_2
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
139774375
NCBI-ProteinID:
XP_071565705
LinkDB
All DBs
Position
Unknown
AA seq
1210 aa
AA seq
DB search
MTESTRFTGPPPIWPDIKSELREYIECPERLPIHQLDSTQRYWPRRADVLSLLEFDLAPV
STTLRFDRDPITGKIGEIQEICLQGAGETARNSMSMTRAPGSLADGVRGNPSNIPFWPGG
FEEPKVPENEIVINDIDFEKNLRTLAKGFSSGLEFKSDNCTPINCTRNETEISLSEETEK
LIINNDNINLMSVVHEEGNLLGSSSSVEEPRKENVQVSDSNIPFTENSTLPKDISIPVLK
ISEKQTELSKTEWAEQLDVSAPVTDFDKRISDPAITFNYELDTFQKQAILKLEENSNVFV
AAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFKRKFESVGLLTGDLQIN
QTASCLIMTTEILQSMLYCASDVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQNINI
VMLSATVPNPIIFADWVGRIKKRKMYVISTLKRPIPLLHYLYTGTDGKTKDDKFLVLDSN
GQFLLDGWYKATNTSDKKKDKTPKDCRRRIQMTSKQEEVLWRAFVSHLQSNDMLPVVVFT
LSRKRCDMNAATLRNLDLTTAREKHQVHVFFQSNIKHLKGSDRELPQVLMMQELLGKGVG
IHHSGILPILREIVEMLFQNGVVKLLFATETFAMGVNMPARTVVFDSIRKYDGSNFRTLY
PTEYIQMAGRAGRRGHDSTGTVIVMCRNDVPHFNDLKPMMCGEPQTLESKFKVTYSMLLN
LRRVNESVTVEAMMRKSFKESPLASQEATYNNELRKIERELSNLPPLTDMQKILSAFYHK
AVDYLEDIKFLNPYLFDSRKTAKSLTEGRVLLISYVNHYNKLALLLKVHYHKSSIQYKVL
ILKDANAPTSEDDEIKSPQIFEKWCEIMSLTKKEIFVPSTNPSHEVLTIFPWHILKITNC
QIKVDCSLVLNDWEKRQISRFKNDPPGQTCQTAVQELTSLSFNASIKPQILQPYIKPSSK
NDFQLRIQHRDKLKANLGDMKCKEIPNFEEQFRPVFERNQLEDKKRQLQLKLSDEGMALY
PDYLNMVALLKHFKYIDNDERVALKGRVALQMGSNELLITELILKNVLTVLQPAEIAALL
SALIFQQRTEFEPKLPPNLTNACKIMSEVHAELEHLEQYYQLSTLQPLNFGLVEVVYEWA
QAKSFAEIMKMTDVQEGIIVRCIQQLGETLQDVKNAAVTIGDPVLKEKMEEASTAIKRDI
VFAASLYTQD
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatcgacgcgatttaccgggcctccacccatctggcctgatattaaatcagaa
ctgcgggaatacattgaatgccctgaacgattacctatacatcagctggacagtacccaa
cgttattggccacgcagagcagatgttctttcgttgttagaatttgatttggctccggtc
agtaccacgctgagatttgaccgtgacccaataacgggcaaaattggcgagatacaagag
atctgcttgcaaggtgcaggggaaacggcaaggaattctatgtctatgactcgtgcacct
ggatcacttgcagacggagttcgaggtaatcctagtaatattccattttggcctggtggt
tttgaagagcctaaagtacctgaaaatgaaatcgttattaacgacattgacttcgagaag
aatttaaggacattagccaaaggatttagctcgggtttagaatttaaaagtgacaattgc
acaccaatcaattgcacgaggaacgaaacagaaatttcattgtctgaagaaactgaaaaa
ttaataatcaataatgataatataaatttaatgtccgttgtacacgaggagggaaatttg
cttggctcatcgtcttcggttgaggagccgagaaaagagaacgttcaagtttcggacagc
aacattccctttacagaaaattccactttacccaaagatataagtatacctgtcttgaaa
atatccgagaaacaaacagaactttcaaagacagaatgggcggagcagctggatgtatcc
gcaccagtaactgactttgacaagagaatatctgacccagcaatcacattcaattatgaa
ctggacacctttcagaaacaagctattcttaaattggaagagaatagcaacgtcttcgtt
gctgcgcatacatcagcggggaagactactgttgctgaatatgccattgcattgagccaa
aagcatatgacaagagtgatttatacgtctcccataaaagcactgtcaaatcaaaaatat
cgtgattttaagagaaagtttgaaagcgttgggttactaacaggtgatttgcaaataaat
caaactgcttcatgtctaatcatgacaacggagatcctacaatcaatgttgtattgtgca
tccgatgttctacgggatctagaatttgttatatttgacgaagtgcattatataaataat
gaagatagaggtcacgtatgggaagaaatagtcattcttttaccacagaatattaatata
gtaatgttatctgcgactgtaccaaatccaataatatttgcggattgggtcggtcgtatc
aaaaagcgaaagatgtacgtgattagcactttgaaaagacccatacctcttttacattac
ttgtacactggcactgacggtaagactaaggatgacaaattcttagtccttgacagcaac
ggccagtttttattggatggatggtacaaagcgacaaatacatccgataaaaagaaagac
aaaaccccaaaggactgtagaagaagaattcaaatgacgtcgaaacaagaagaggtatta
tggagagcatttgtaagccatcttcagagcaatgatatgttacccgttgtcgtatttact
ctgtcgaggaaacgctgtgatatgaatgctgctacgttaagaaatcttgatttaacgact
gcgagggaaaagcatcaagtacatgtatttttccaatctaacataaaacacctgaagggt
agcgacagagaattaccacaagtacttatgatgcaagagctcttaggaaaaggagtgggt
atacatcatagtgggatactgccaattttgagagagatcgtagaaatgttatttcagaat
ggagttgtgaagttactattcgcgacagaaacttttgctatgggagtcaacatgccagcg
cgcacggtggtgttcgattctatacgaaagtacgacggaagcaactttcgtaccctgtat
ccgactgaatacatacagatggctggtcgtgccggacggcgaggtcatgacagcacggga
actgttatagtgatgtgcagaaacgacgtgccacactttaacgacttgaaacctatgatg
tgcggtgagccgcaaacattagaatcgaaatttaaagtcacgtattccatgcttctaaat
ttgagaagggtaaatgaatccgtcaccgttgaggcgatgatgcgcaaatctttcaaggaa
tcgccattggcctcgcaggaagcaacatataacaacgagttacggaaaatcgagcgcgaa
ttgtcgaacttgccgcctttgaccgatatgcaaaaaatactctctgcattctatcacaag
gcggtcgattatctggaagatattaaattcttgaacccttatttattcgattcgagaaaa
acggcgaaaagtttaactgagggtagagtcttgttaatatcctacgtgaatcattacaac
aaactagccctattattgaaagttcactatcacaaaagctctattcaatacaaagtcttg
atactcaaggacgcgaatgcacccacttccgaagatgatgaaatcaaaagtcctcagata
ttcgagaaatggtgcgagattatgagcctgacaaaaaaagagatatttgtcccaagcact
aatccgtcacacgaggttctgactatatttccatggcatatattgaaaataactaattgt
cagataaaagttgactgttctttggtattaaatgattgggaaaagagacaaatctcacga
ttcaaaaacgatccaccgggacaaacatgtcagacagcagttcaagaattgacttctcta
tcatttaacgcttctatcaagcctcaaatcctacaaccgtatatcaagccctcgtcgaaa
aatgattttcaattgaggatacaacatagggacaaattaaaagctaatctgggcgatatg
aagtgcaaggaaataccaaactttgaagaacaattcagacctgtattcgaacggaatcaa
cttgaagataaaaagcgacagcttcaacttaaactcagcgatgaaggaatggcattgtat
ccggattacctgaatatggtagcactccttaaacattttaaatacatagataatgatgaa
agagtcgccctaaaaggaagagtcgcgctgcaaatgggtagtaacgaactgctgataaca
gaattgattctcaaaaatgtgttgactgttttacaaccggcagaaatagcagcgttgtta
tcagcactgatcttccagcaacgcacagaattcgaacctaaactcccaccaaaccttact
aacgcttgcaagataatgagcgaggtgcacgcggaactggagcatctggagcaatactat
caactatcgacattacaaccattgaatttcggcttggtggaggttgtctacgaatgggcg
caggccaaatcattcgccgagatcatgaagatgacggatgtccaggaaggaattatagtt
cgttgtatacagcaactcggcgaaacattgcaagatgttaaaaatgcggctgtgacgata
ggcgacccagttttgaaagagaagatggaggaagcctcgaccgcgatcaaacgtgacata
gttttcgccgcgtccttatacacccaagactga
DBGET
integrated database retrieval system
