Thermodesulfovibrio obliviosus: V4D31_00950
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Entry
V4D31_00950 CDS
T10572
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tob Thermodesulfovibrio obliviosus
Pathway
tob03410
Base excision repair
tob03430
Mismatch repair
tob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
V4D31_00950 (recJ)
03430 Mismatch repair
V4D31_00950 (recJ)
03440 Homologous recombination
V4D31_00950 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tob03400
]
V4D31_00950 (recJ)
DNA repair and recombination proteins [BR:
tob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
V4D31_00950 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
V4D31_00950 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V4D31_00950 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
XisH
Motif
Other DBs
NCBI-ProteinID:
XCH48735
UniProt:
A0AAU8H228
LinkDB
All DBs
Position
195466..197136
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AA seq
556 aa
AA seq
DB search
MQYSEWVVVKTNQEYLEYLSRFLNISIPVVQVLVSRGLKDVNEIYSFLNPSMDLIDPFSI
SGVYETVRIIKEAVKSGIRIFINGDYDADGLTATAILYDILKKMKAQVFYHIPHRIHHGY
GLTQTSIEEAKKVGAKLIITVDCGIRDFEMVQYAKKQGIQTIITDHHEPLTVDGKLVLPD
ALIIINPKVDENSPYTSLAGVGVAFMLAMALNSEEAMQYLDLVTLGTYADMVPLNTVNRA
LIKQGWQLIENPCRVSIKTLKDIASVSGNIKKFHMSYCLIPKINAPGRVDHAADVVKFFV
SENFEEIETIGKWINQMNSLRQKTEEKIMEEIEKKLETEFNDEPVIVLWGDWHIGVVGTV
ASKLLDRFNRPVFIMAIDENKAKGSARAPNGVDLQKMLGSCKDLLIRFGGHKQAAGVMLY
KEKLNEFKERLCKLAGSMDMEPQNVLQLDAQVSLSEVNEKVTEEIKLLEPFGEGNREPLF
GAKELTVVNLRKVGSNHLKMSLRQNGKYIPAIGFDMAKEPILEGCLIDAAFTPVINEWEG
VRSLQLQLKAIRRTQQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcaatacagcgaatgggtggttgttaagacaaatcaggaatatcttgagtatctgtcg
aggtttttgaatatatcaattcctgtggtacaggttcttgtttcaaggggtctaaaagat
gtaaatgaaatttactccttcctaaatccttcaatggatttaattgatcccttcagtatt
tcaggagtttatgaaactgtacgaataataaaggaagctgtaaaatcaggcataaggatt
tttataaatggagattatgatgctgatggattaacagctactgcaattctttatgacatt
ttgaaaaagatgaaggctcaggttttttatcatattccccatagaattcatcatggatat
ggtttaactcaaacaagtattgaagaggcaaaaaaagtaggggcaaagctcattataact
gttgattgtggaataagagactttgaaatggttcaatacgcaaaaaaacaaggaatacag
acaatcattacagaccatcatgaaccattgacagtagacggtaagcttgttcttcccgat
gctctaatcataatcaatcctaaagttgatgaaaactcaccatatacatctctggcaggt
gtcggagttgctttcatgcttgctatggctttaaattctgaagaagccatgcagtatctt
gaccttgtaacacttggaacttatgctgatatggttcctcttaatactgttaacagagca
ttaataaagcaaggatggcagcttatagaaaatccatgtagagtatcaatcaagacatta
aaagatattgcatcagtttctggcaacattaaaaaatttcacatgagctattgtcttata
ccgaaaattaacgcacctggaagagttgatcatgcagcagatgtggtgaaattcttcgtt
tcagagaattttgaagagattgaaactattggcaagtggataaatcagatgaattcttta
agacagaaaacagaagaaaaaattatggaagaaattgaaaaaaagcttgaaacagagttt
aatgacgaaccagttattgttttatggggagactggcatattggagttgttggcacagtg
gcaagcaaacttcttgatagatttaacagacctgtattcataatggcaatagacgaaaac
aaagcaaagggttctgcaagagctcccaatggtgtagatttacagaaaatgcttggcagt
tgtaaagacctgcttatacgctttggaggtcacaagcaggcagcaggagtaatgctttat
aaagaaaagcttaatgaattcaaagaaaggctttgcaaattagcaggaagcatggacatg
gaaccccaaaatgtgcttcagctggatgctcaggtcagtctatcagaggtcaatgaaaaa
gtaacagaagagataaagcttcttgaaccttttggagaggggaatcgtgaacctctattt
ggagcaaaggagcttactgtggtaaatttaagaaaggtgggcagtaatcatcttaaaatg
tctttaaggcaaaatgggaaatatattcctgcaataggttttgacatggcaaaagaacca
atacttgagggatgccttattgatgcagcattcactccagtgataaatgagtgggaggga
gtaagaagccttcaacttcaacttaaggcaattagaaggacacaacaatga
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